Clavibacter sepedonicus: CMS2462
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Entry
CMS2462 CDS
T00678
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cms
Clavibacter sepedonicus
Pathway
cms03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CMS2462 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cms03400
]
CMS2462 (mfd)
Enzymes [BR:
cms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CMS2462 (mfd)
DNA repair and recombination proteins [BR:
cms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CMS2462 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
CAQ02542
UniProt:
B0RH66
LinkDB
All DBs
Position
complement(2607444..2611076)
Genome browser
AA seq
1210 aa
AA seq
DB search
MILQGLIPALSRASTFDDALASASRDADFSLTEGLQGPLLAGLLRQRIQRGIPGCLLVVT
ATGRESEGMRRSLDAVLPDAEILEFPAWETLPHERLSPSAEIVGKRIHALRRMEQWHAAL
GQGAREVPADQVRPLVIVASVRAALQPVADNLTELAPVQLATGSRGHDLSELAVRLVDLA
YSRVDMVTRRGEFAVRGGILDVFPPVSDHPVRVEFFGDEVDQMRPFAVADQRSLEEEITS
VELPPSRELLLSAPVRQRAREMQHEFPNLQQMLAKIAEGIPVEGMESLAPALVDRLVPVT
HYLPVDAAIAVVSPERVSTRAQSLADTNREFLDAAWNAATAGAQAPIDLASGDFLSLGRL
RDARGPRRWWTLSGFQATDVLPEDLGIDEVMTVRIQADPVPSFAGNADGAIEHVRERLAA
GWAVGVVAQGSGLVERADTVLRDAGVPARVVEEFPAEPEPGIAYLLRSAIDAGFEMPEVK
LALLTESEFYGRAAGYDSRQVKKLATRRKNVVDPLQLKPGDHVVHTTHGIGKFVELTQRE
VSSGGRDTVKTRREYLVIEYAPSKRGYPGDKLFVPTDQLDLLSRYVGGEEPSLSKMGGSD
WAAAKGKARRAVRDIAVELVKLYSARMASRGHSFPPDTPWQRELEEAFPFMETPDQLTVI
DEVKRDMESPIPMDRLVSGDVGFGKTEIAVRAAFKAVQDGKQVVMLVPTTLLVKQHFETF
SERFAGFPVHLRQLSRFQSEKESRETVKGLEDGSVDVVIGTHRLLTGSIAFKDVGLVIID
EEQRFGVEHKDALKKLKANVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTF
VGPNSEKQIAAAIRRELLREGQVFFVHNRVSSINRVASELAELVPEARVAVAHGKMSEAM
LEQVIVDFWERKFDVLVSTTIIETGLDIANANTLIIDRADKYGLSQLHQLRGRVGRGRER
AYAYFLYDADKPLSETAHDRLSTIAANNELGSGMQVALKDLEIRGAGNLLGGEQSGHIQG
VGFDLYLRMIGEAVSTFRGDVAEGQTELRLELPVDAHIPEEYVDSERLRLEAYQKLSTAA
SPTATDDQIDRVIEELSDRYGEPPVEVDNLVRVSRLRRVAQRAGLSEVVAMGRNLRIAPA
DLADSKQVRLQRMYPGSRLFAQTNAVTVPLPKRDGEPLPDAELVDWVRQLLDAVFTVEPA
PAAKESAPKA
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctccagggcttgatcccggcgctctcgcgcgcctccacgttcgacgacgccctc
gcatcggcctcccgcgacgccgacttctccctcaccgaggggctccaggggccgctgctc
gcggggctcctccgccagcgcatccagcgcggcatcccggggtgcctgctcgtcgtcacc
gccaccggccgcgagtccgagggcatgcgccgcagcctcgacgcggtgctgccggacgcg
gagatcctcgagttccccgcgtgggagacgctgccgcacgagcggctgagcccgagcgcc
gagatcgtgggcaagcgcatccacgcgctgcgccgcatggagcagtggcatgccgcgctc
ggccagggcgcgcgcgaggtgccggccgaccaggtgcgcccgctcgtcatcgtcgcctcg
gtgcgcgcggccctccagcccgtcgccgacaacctcacggagctggcgcccgtgcagctc
gccaccggcagccgcggccacgacctctccgagctggccgtccggctcgtcgacctcgcg
tactcgcgcgtcgacatggtcacgcgccgcggcgagttcgcggtgcgcggcggcatcctc
gacgtgttcccgcccgtctccgaccaccccgtgcgcgtcgagttcttcggcgacgaggtc
gaccagatgcggccgttcgcggtcgccgaccagcggtccctcgaggaggagatcacctcg
gtcgagctgccgccgagccgcgagctgctgctgagcgcgcccgtgcgccagcgcgcccgc
gagatgcagcacgagttcccgaacctccagcagatgctggcgaagatcgcggagggcatc
ccggtggagggcatggagtcgctcgcgcccgcgctcgtcgacaggctcgtgccggtcacg
cactacctgccggtggacgcggccatcgccgtcgtctcgcccgagcgcgtgtccacgcgc
gcgcagagcctcgccgacaccaaccgcgagttcctcgacgccgcctggaacgccgcgacc
gcaggcgcgcaggcgcccatcgacctcgcgtccggcgacttcctctcgctggggaggctc
cgcgacgcccgcggcccgcgtcgctggtggaccctctccggcttccaggccaccgacgtg
ctgccggaggacctcgggatcgacgaggtcatgaccgtgcgcatccaggcggatcccgtg
ccgagcttcgcgggcaacgccgacggcgccatcgagcacgtgcgcgagcgcctcgcggcc
gggtgggccgtgggcgtcgtggcccagggatccggcctcgtcgagcgcgccgacaccgtg
ctccgcgacgcgggcgtcccggcgcgcgtggtcgaggagttcccggccgagcccgagccc
ggcatcgcctacctgctccgctccgccatcgacgcgggcttcgagatgcccgaggtcaag
ctcgcgctcctcaccgagagcgagttctacgggcgcgccgccggctacgacagccgccag
gtcaagaagctcgccacgcggcgcaagaacgtggtggatccgctgcagctcaagcccggc
gaccacgtcgtgcacaccacgcacggcatcgggaagttcgtggagctcacccagcgcgag
gtctcctcgggcggccgcgacaccgtgaagacgcggcgcgagtacctcgtcatcgagtac
gcgccctccaagcgcggctacccgggcgacaagctcttcgtgcccaccgaccagctcgac
ctgctcagccgctacgtcggcggcgaggagccgagcctcagcaagatgggcggcagcgac
tgggccgcggccaagggcaaggcgcgccgcgccgtccgcgacatcgcggtcgagctcgtc
aagctctactcggcgcgcatggcgtcgcgcggccactccttcccgccggacaccccgtgg
cagcgcgagctcgaggaggcgttccccttcatggagacgccggatcagctcaccgtcatc
gacgaggtcaagcgcgacatggagagccccatccccatggaccgcctggtctcgggcgac
gtcggcttcggcaagaccgagatcgccgtgcgcgccgcgttcaaggccgtgcaggacggc
aagcaggtcgtgatgctcgtgcccacgaccctgctcgtgaagcagcacttcgagaccttc
tccgagcgcttcgccgggttccccgtgcacctccgtcagctcagccgcttccagtcggag
aaggagtcgcgcgagaccgtgaaggggctggaggacggctcggtcgacgtcgtcatcggc
acccaccgcctgctcacgggcagcatcgcgttcaaggacgtggggctcgtcatcatcgac
gaggagcagcggttcggcgtggagcataaggacgcgctgaagaagctgaaggccaacgtc
gacatcctcgcgatgtcggccacgcccatcccgcgcacgctcgagatggcggtcacgggc
atccgcgagatgtcgacgctcgcgacgccgccggaggaccggcaccccatcctcacgttc
gtggggccgaacagcgagaagcagatcgccgccgccatccgccgcgagctgctgcgcgag
ggccaggtgttcttcgtgcacaaccgtgtctcgagcatcaaccgggtcgcgtcggagctc
gccgagctcgtgcccgaggcgcgcgtcgccgtcgcccacggcaagatgagcgaggcgatg
ctggagcaggtcatcgtcgacttctgggagcgcaagttcgacgtgctcgtctcgaccacc
atcatcgagaccggcctcgacatcgcgaacgcgaacacgctcatcatcgaccgggctgac
aagtatggcctcagccagctgcaccagctgcgcgggcgcgtcggccgcgggcgggagcgc
gcgtacgcgtacttcctctacgacgccgacaagccgctgtccgagacggcgcacgaccgg
ctgtccaccatcgcggcgaacaacgagctgggatccggcatgcaggtcgcgctcaaggac
ctcgagatccgcggcgccggcaacctgctgggcggcgagcagtccggccacatccagggc
gtcggcttcgacctgtacctgcgcatgatcggcgaggccgtctcgaccttccgcggcgac
gtcgcggagggccagaccgagctgcggctcgagctgccggtcgacgcgcacatccccgag
gagtacgtggacagcgagcggctgcgcctcgaggcgtaccagaagctctccaccgcggcc
tcgcccacggccaccgacgaccagatcgaccgggtcatcgaggagctgtcggaccgctac
ggcgagccgcccgttgaggtcgacaacctcgtgcgggtctcgcgtctgcgccgcgtggcg
cagcgggcgggcctcagcgaggtcgtcgcgatgggccggaacctgcgcatcgctccggcc
gacctcgccgacagcaagcaggtgcggctgcagcgcatgtacccgggcagccggctgttc
gcgcagaccaacgccgtcacggtgccgctgcccaagcgcgacggcgagccgctgcccgac
gccgagctcgtggactgggtgcgccagctgctcgacgcggtcttcaccgtcgagccggcg
ccggccgcgaaggagtccgcccccaaggcgtga
DBGET
integrated database retrieval system
