Cordyceps militaris: CCM_00271
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Entry
CCM_00271 CDS
T03108
Name
(RefSeq) TFIIH basal transcription factor complex, subunit SSL1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cmt
Cordyceps militaris
Pathway
cmt03022
Basal transcription factors
cmt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CCM_00271
09124 Replication and repair
03420 Nucleotide excision repair
CCM_00271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmt03021
]
CCM_00271
03400 DNA repair and recombination proteins [BR:
cmt03400
]
CCM_00271
Transcription machinery [BR:
cmt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CCM_00271
DNA repair and recombination proteins [BR:
cmt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CCM_00271
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Motif
Other DBs
NCBI-GeneID:
18162306
NCBI-ProteinID:
XP_006665494
UniProt:
G3J334
LinkDB
All DBs
Position
Unknown
AA seq
508 aa
AA seq
DB search
MADSDGEFVADNMSDDLMDHTIEDEDDDDDHHHTSTAGERPSRTSGGGRSKRRKKDGAGG
GASRKKKASAQAWEQSKRTWETGLPEEGDDGTLDLTTLEAEKRRRLRRDTTPLQRGIIRH
LVLVLDMSFAMADKDMLPTRHRLTLRYAAAFVREFFEQNPISQLGIVGMRDGVAVRVSDL
GGNPAEHLERLKALESQDPQGNPSLQNALEMCRGCNANEFNVHTNSHAPSHGTREVLIIY
GALLSSDPGDIHDTLASLINDRIRVSIVGLSAHLSICAELCARTNAGDTSQYGVATDEVH
FRELFLAATTPPVTRTKEQSTASLLMMGFPSRVLAPGGATSFCACHNRPCREGFLCTRCG
TRVCRLPAECPACALTLILSTHLARSYHHLFPLRNWVEVSWADAVGRSPACFACQCPFPA
AAATGGDASAREEGQGKKRPTVKGVSESGRYACEVCGNHFCIDCDVYAHEVIHNCPGCQS
NVQPAQDEAAYSNGLSNGHTNGAMTIDA
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggccgattccgacggcgagtttgtcgccgacaacatgtcagacgacctcatggaccac
acgatcgaagacgaagacgacgatgacgatcaccaccacacctcgaccgccggagagcgg
ccctcccgaacctctggcggcgggcgatcaaagcgccgaaaaaaggacggcgccggtggc
ggcgccagccgcaagaagaaggcgtcggcgcaggcgtgggagcagtcgaagcggacgtgg
gagacgggcctgcccgaggagggtgacgacggaacgctggacctgacgacgctcgaggcg
gagaagcggcggcggctgcgacgcgacacgacgccgctgcagcgcggcatcatccggcac
ctggtgctggtgctcgacatgtcgtttgccatggccgacaaggacatgctgccgacgcgg
caccgcctgacgctgcgctacgcggccgcctttgtgcgcgagttctttgagcagaacccc
atctcgcagctcggcatcgtcggcatgcgcgacggcgtggcggtgcgcgtcagcgacctc
ggcggcaacccggccgagcacctggagcggctcaaggcgctcgagagccaggatccgcag
gggaacccgagcttgcagaatgccctggaaatgtgccgcggatgcaacgctaacgaattc
aatgtacacacaaatagtcatgcaccatcgcacggcacgagagaagtcctcatcatctac
ggcgcgctcctctcgagcgaccccggcgacatccacgacaccctggcgagcctcatcaac
gaccggatccgcgtctccattgtcggcctctcggcgcacctgtccatctgcgcggagctg
tgcgcgcggaccaacgccggcgacacgtcgcagtacggcgtcgccacggacgaggtgcac
tttcgggagctcttcctggcggcaacgacgccgcccgtcacgcgcaccaaggagcagagc
accgccagcctgctcatgatgggcttcccctcgcgcgtgctggcccccggcggcgccacc
agcttctgcgcctgccacaaccggccctgccgcgagggcttcctctgcacccgctgcggc
acccgcgtctgccgtctgcccgccgagtgccccgcctgcgcgctcacgctcatcctctcg
acgcacctcgcgcgctcctaccaccacttgtttccgctgcgcaactgggtcgaggtgtcg
tgggccgacgcggtcgggcgctccccggcgtgctttgcttgtcagtgcccgtttcctgcg
gcggcggcgacgggcggcgacgcgtctgctagggaggagggccaggggaagaagcggccg
acggtcaagggggtcagcgagagcgggcggtatgcgtgcgaggtgtgcgggaaccacttt
tgcatcgactgcgatgtgtacgcccatgaggttatacacaactgccctggctgccagagt
aatgtgcagccggcccaagacgaggctgcctattcgaatggactcagcaacggccacacc
aacggcgccatgacgattgatgcgtag
DBGET
integrated database retrieval system
