Cordyceps militaris: CCM_02533
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Entry
CCM_02533 CDS
T03108
Name
(RefSeq) DNA ligase, putative
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cmt
Cordyceps militaris
Pathway
cmt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CCM_02533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmt03400
]
CCM_02533
Enzymes [BR:
cmt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CCM_02533
DNA repair and recombination proteins [BR:
cmt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CCM_02533
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
RNA_ligase
DNA_ligase_A_C
BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
18164560
NCBI-ProteinID:
XP_006667748
UniProt:
G3JA92
LinkDB
All DBs
Position
Unknown
AA seq
1001 aa
AA seq
DB search
MSEAEARAIDDDAEHEEQIQYGSEEARKELDEKYPNRPHNFAKTLLFSDLYRNLFNPLNE
NKRQPTGGVARKKGPRGQTQLSPQEQRRHIIDRFITRWRKEVGPDFYPALRLILPDKDRD
RGVYGLKENAIGKLLVKLMKIDKNSEDGYNLLHWKLPGQTTAARLAGDFAGRCYEAISKR
PMRTEPGTMTIAEVNEQLDKLAASAGESENVRVFETFYNRMNAEELLWLIRIVLRQMKVG
ATEKTLLYLWHPDGESLFSVSSSLRRVCWELYDPAVRLESEGASLTLMQCFQPQLAQFQT
PASFKKMTELLRPTPDDPEFWIEEKLDGERMQMHMMEDPSTPGGKRFCFWSRKAKEYTYL
YGHGFHDSNSSLTRHLQSAFASGVRNLILDGEMITWDMSVDKMVPFGTLKTAALAEQQNR
SGSDASGHRPLFRVFDILYLNDKQLTQYTLRDRHHALEKAVQPVHRRLEIHSYTSATSPD
AIEPLLRDVVASASEGLVLKNPRSMYRLNSRNDDWLKVKPEYMSEFGESLDCLVIGGYYG
SGKRGGTLSSYLCGLRASPNQVQAGADPEKCFSFFKVGGGFRAEDYAEIRHRTEGKWIDW
DARHPPSQFIELGGGEAKQLERPDVWIRPKDSIVVSVKAASVGPSDSFARGYTLRFPRFR
RLRLDRAWDSALSVDEFQSLKQHADEESKDKAMTMEDKKRGRNPKRVKRELVIVGGESTK
GPLPLQTTRTTGLFDGIEFCVLSESLKPFKRTKAELEVIIKENGGTVSQRAAPATAMVLI
ADKKVVKVASLMKQGAVDIIRPRWIQDCLTQLQADTEAGAGLFLLPYEEVHLFHATDALK
HVAAQNTDQYGDSYARDLPLEELRALMRDMPKIESGEGPFDKRGFLDELADRGRDLSAQL
RSMMFQRCVVHVHRASAGDAGEEAEAERLARYVRYGGGVCVDGLESEGLTHVVLARDSQD
TAEELRRELSTRPKLPRLVRGSWIETCWKERSLVDEEQYSV
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagcggaagccagagcgatcgatgatgatgccgagcatgaggagcagatccag
tacggctctgaggaagcccgaaaggagcttgacgaaaaatatcccaacaggccgcataac
tttgccaaaacactgctcttttcagacttgtaccggaacctctttaacccgctcaatgag
aacaagcggcagcccactggcggcgtcgcgcgcaaaaagggcccccgcgggcagacgcag
ctctcgccgcaggagcagcgccgccacatcatcgaccgcttcatcacgcgctggcgcaag
gaggtcggcccagacttttaccctgcgctgcgccttatcctgcccgacaaggaccgcgac
cggggcgtctacggcttgaaggagaatgccataggaaagcttctcgtcaagctgatgaag
attgacaaaaactccgaggacggctacaacctgctgcactggaagctgccgggccagacc
acggcggcgcggctcgcgggcgactttgccgggcgctgctacgaggccatctcgaagcgc
ccgatgcgcaccgagcccggcaccatgaccattgccgaggtgaatgagcagctggacaag
ctggccgcgtcggccggcgagagcgagaatgtgcgcgtctttgaaacgttttacaaccgc
atgaatgcagaggagttgctgtggcttatccgcatcgtcctgcgacagatgaaggtcggc
gcgacggaaaagacgctgctgtacctgtggcaccctgacggggagtcactgtttagcgtg
tcgtcgagcctgcgccgcgtgtgctgggagctatacgacccggcggtgcggctcgagtcg
gagggcgcgagcctcacgctgatgcagtgcttccagccgcagctggcgcagtttcagacg
ccagcgtcgttcaagaagatgactgagctgctgcggccgacccctgacgaccctgagttc
tggatcgaggagaaactcgacggcgagcgcatgcagatgcacatgatggaggaccccagt
accccaggcggcaagcgattctgcttctggtcacgcaaggccaaggagtacacctacctc
tatggtcacggcttccacgacagcaattccagcctgacgcgccacctccagagcgccttt
gcatcaggcgtgcgcaacctcatccttgacggcgaaatgattacatgggacatgagcgtt
gacaagatggtcccgtttggcacgctcaagacggccgcgctggctgagcagcagaaccgc
tcaggctccgacgcctcgggccaccgcccgctgttccgtgtctttgatatcctgtacctc
aacgacaagcagctgacgcagtatacgctgcgcgaccgccaccacgcgctagaaaaggcc
gtccagcccgtgcaccgccgactggagattcacagctacacgagcgccacatcacccgac
gccatcgagccgctgctgcgcgacgtcgtggccagcgcctccgagggcctggtgctcaag
aatccgcggtccatgtaccgcctcaacagccgcaacgacgactggctcaaggtcaagccc
gaatacatgtccgagtttggcgagtcgctcgactgcctcgtcattggcggctactacggc
tccggcaagcgcggtggcacgctgtccagctacctctgcggtctgcgcgcctcgcccaac
caggttcaggctggtgccgacccagaaaagtgcttcagcttcttcaaggtcggtggcggc
ttccgcgctgaagactacgccgagattcggcaccgcaccgagggcaagtggatcgactgg
gacgcgcgccacccgccctctcagttcattgagctcggcggcggcgaggccaagcagctg
gagcggcccgacgtgtggatccgccccaaggactccatcgtcgtgtcggtcaaggcggcg
agcgttgggccttcggactcgtttgcgcgcggctacacgctgcgttttccgcgcttccga
cggctgcggctggatcgcgcgtgggatagcgccctctccgtggacgagtttcagagctta
aagcagcacgccgatgaagagtccaaagacaaggccatgacgatggaggacaagaagcgc
gggcgcaacccgaagcgtgtgaagcgcgagctcgtcatcgtcggcggcgagagcaccaag
ggcccgctgccgctgcagacaacccggacaacggggctgtttgacggcatcgagttttgt
gtcctatccgagtcgctcaagccgtttaagcgcaccaaggcggagctggaagtcatcatc
aaggagaacggcggcaccgtctcgcagcgcgcggcaccggcgacggccatggtcctcatc
gcggacaagaaggtcgtcaaggtcgcgagcctgatgaagcagggcgccgtggacataatc
cggccccggtggatccaggattgcttgacgcagctgcaggccgacacggaggcgggtgcg
ggcctcttcttgctgccgtacgaggaggtgcacctgttccacgcgacggacgcgctcaag
cacgtggcggcgcaaaacacagaccagtacggcgacagctacgcgcgggacctgcctctc
gaggagctgcgggcgctgatgcgcgacatgcccaagattgagagcggggaggggccgttc
gacaagcgcgggtttctggacgagctggcggacagagggcgagatctgtcggcgcagctg
cggagcatgatgtttcaacggtgcgtggtgcatgttcatcgtgcttcggctggtgatgcg
ggtgaggaggcggaagcggagaggttggcgcgctatgtacgctatggaggcggtgtctgt
gtggatggcctggaaagtgagggcctcacgcatgtggtgcttgctcgagatagtcaggat
actgcagaggagctgcgtcgggagctgagcacgaggccaaagctgccccgtctggtacgt
ggcagctggatcgagacttgctggaaggagaggtcgctcgtcgatgaagaacagtacagt
gtatga
DBGET
integrated database retrieval system