Chelonia mydas (green sea turtle): 102931065
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Entry
102931065 CDS
T02989
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102931065 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmy03400
]
102931065 (LIG4)
Enzymes [BR:
cmy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102931065 (LIG4)
DNA repair and recombination proteins [BR:
cmy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102931065 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
RTT107_BRCT_5
mRNA_cap_enzyme
Ribosomal_S5_C
Motif
Other DBs
NCBI-GeneID:
102931065
NCBI-ProteinID:
XP_007055917
UniProt:
M7CF39
LinkDB
All DBs
Position
1:complement(104916062..104924932)
Genome browser
AA seq
913 aa
AA seq
DB search
MSSTPTSQSSPKRTVASVVPFADLCSILERIQKCKSRPEKTKYFKEFLDSWRKFHDALHK
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRTP
TGSHGDAGDFAMIAYFVLKPRCPKQGRLTIQQVNELLDSVASNNDAKRKDLVKKNILQLI
TQSSALEQKWLIRMIIKDLKLGVSQQTIFSLFHSDATELYNVTTDLEKVCRQLHDPSVSL
SDVSTMLFSAFKPMLAAIANVQQIEKQMNHQSFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKNNIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMV
DDSDLQTCFCVFDVLMVNDQKLGHEILSKRYEILNELFTPITGRIHIVHKTQASTRKEVV
DALNEAIDNREEGIMIKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIIGGYWGKGL
RGGMMSHFLCAVAETSPPGEKPSVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHKRDPP
CNILCGTEKPEVYIEPCNSIIVQIKAAEIVSSDMYKTDCTLRFPRIEKIREDKEWHECMT
LDFLEQLRGKASGKLASKHLDVGDDEPQEKKRKTVPKVKKIIGIMDHFKAPDLSNVNKIS
NIFEDVEFCVMTGTENHSKSELESKIAESGGNVVQNPGPDTYCVIAGIENVRVKNIISSN
KHDVVRAEWLLQCFEKKIFVPWQPAVMIHMSPDTKQRFACEYDCYGDSYTADTEVTQLKE
VFSRINNKNDEKIPLDMIADLEERYLWNSSPLCMFRQNTIYLDLYAVVNDPSTKTHGTML
SIRALELRFHGAEIVSQIKEGVSHVIMGEDHTHVKEIKTLRRTFEKKFKILSERWITESI
KEGKLQNENPYLI
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccacacctacttcacaatcttcccctaaacgaacggtggcatcagtagttcct
tttgcagatctgtgttcaattttagaacgaatacagaaatgtaaatcccggccagagaaa
accaagtattttaaggaatttttagattcatggaggaaatttcatgatgctcttcataaa
aaagagaaagatgtcacagactctttttatccagcaatgcgacttattcttccgcaattg
gaaagagagagaatggcttatggaattaaagaaaccatgcttgctaagctctatattgaa
ctgctcaatttacccaaagaaggaaaagatgccctaaaacttttaaattatagaacacct
actggctcacatggagatgctggagactttgcaatgattgcctattttgtattgaaaccg
aggtgcccaaaacaaggcagactgaccatacaacaggtgaatgagctgctggattcagtt
gctagtaataatgatgccaaaaggaaggacctagtaaagaaaaatattcttcagttaata
actcagagctcagcacttgaacaaaagtggctgatccggatgattataaaggatctaaaa
cttggtgttagtcagcaaaccatattttcccttttccattctgatgctactgagttatac
aatgtcacaactgacctggagaaagtttgcagacaactgcatgacccttctgtatcactc
agtgatgtttccaccatgttgttttctgcctttaaacctatgcttgctgctattgctaat
gtccagcaaattgagaaacaaatgaatcaccagagtttctacatagaaactaaactagat
ggtgaacgtatgcagatgcacaaagatggagatgtatacaagtatttctcccgtaatggg
tttgattatactcagcagtttggtgcttctcccctcgaaggttcattaactccatttatt
cataatgtgtttaaaaataatatacaaaactgcattcttgatggtgaaatgatggcctac
aatcccaatacacaaacttttatgcagaagggaaacaaatttgacataaaaagaatggta
gatgattctgatctgcagacatgcttttgtgtgtttgatgtattaatggttaatgatcag
aagttaggtcacgagatactaagcaaaagatatgagattctaaatgagctgtttacacca
ataacaggcagaatacacatagtgcataaaacacaggctagcaccaggaaagaagtagtt
gatgctctgaatgaagcaatagataacagagaagaaggaatcatgataaaagatcctatg
tccatttacaagccagacaaacgtggggaaggctggttaaaaatcaaaccagagtatgtc
aatgggctcatggatgagctagacctattaattattggtggttactggggaaaaggtttg
cgtggtggcatgatgtctcattttttgtgtgctgttgctgagacttcccctcctggtgaa
aaaccatctgtctttcattctatttgtcgtgttggttctggttacactatgaaggagcta
tacgatcttggtttgaaattggccaaacactggaagccttaccataaaagagatcctcct
tgtaatattttatgtggaactgagaagcctgaagtttacatcgagccttgtaactcaatc
atagttcagattaaggcagcggagatcgttagtagtgatatgtacaaaactgattgcact
ttgcgattccctcgaattgagaaaataagagaggacaaagagtggcatgaatgtatgact
ttggatttcttagaacagctcagaggtaaagcatcagggaagctagcatctaagcacctt
gatgtgggtgatgatgaaccacaagaaaagaaacggaaaactgtaccaaaggtaaagaaa
ataattggaataatggatcattttaaagcccctgatctttccaatgtaaataagatttct
aatatatttgaagatgttgagttttgtgttatgactggaacagaaaaccattcaaaatct
gaactggaaagtaaaatagcagaaagtggtggtaatgtggtacaaaaccctggaccagac
acttactgtgttattgcaggaattgagaatgtcagagtaaaaaatattatatcttccaac
aagcatgatgttgtgagagcagagtggcttttacagtgttttgaaaagaaaatatttgta
ccatggcagcctgccgtcatgattcacatgtctccagacacaaaacaacgttttgcatgt
gagtatgattgttatggtgacagctacacagcagatacagaggtgacccaattaaaggaa
gtattctcaagaattaataataaaaatgatgagaagatacctctggacatgattgctgac
ttagaagaacgttatctgtggaatagctctccactctgtatgttcaggcaaaataccatt
tatctggacctttatgctgtggttaatgaccccagtaccaagacccatggaacaatgcta
tcaattagggctttggagctccgttttcatggagcagaaatagtctcgcagataaaggag
ggtgtgtcccatgtaattatgggagaagatcatacccatgtaaaagagataaaaacactt
aggagaacatttgagaaaaaatttaaaatcctatctgagcggtggataacagagtcaata
aaggaggggaagttacagaatgaaaatccatacctaatttaa
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