Chelonia mydas (green sea turtle): 102931483
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Entry
102931483 CDS
T02989
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
cmy
Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102931483
Enzymes [BR:
cmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102931483
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
102931483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
FliJ
Motif
Other DBs
NCBI-GeneID:
102931483
NCBI-ProteinID:
XP_007067108
LinkDB
All DBs
Position
4:complement(69452813..69523898)
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AA seq
1776 aa
AA seq
DB search
MASGGTVQDGSDDDGGDLTAQNLEQKSVSFEDPVENKSGCSDFSNVFCWEQEIQQVSRAS
DYSRQDKYDFRNPELDKHIGLLEKISDLILNDIPKAEYVSLLNDYVESEFFLIDGDSLFI
TCISEQTLLPGQNLHFFYLVERFLLDLTNKGAKYIIVFFKDAEHAYYRHPTLLSLRTTLI
LHLQHSTDAVIHTEFSNFLEGKWQSFLQESYPYFIIISDDGLTKLQTSFLNLFIIHALSK
RINVVLTSGQESDFIRVYGYHIHGMYRHKEFFSQHREEIPFVFQTLVKDLQESSTAALLS
LSGHSSVKDMEKEVCETLSQLKHVWPEISDIRHIVCIVTCALGLRTYSRLQKKHQATIRK
QEKSREITPEEAEDLIRMYCLSVVFLFHLPLSQRARVRLISYHWSKQAFTFIQMHKGCEF
FLLKHLTTEKLWKVDFTHLPDLSDDLLWKNVAYYYEVENEQGLNLDMGEKIKREYEYLWS
IISKLAGKDDDGKSLPLRRTSTSFLKKRASPIKESKNIPNLGLIPMTSMVVDEFAGDILS
SLPFLKSDDSAVTSLIKQKEFDEIRHWHSGKLLSDDYDRTKSSSQTMGKDPWALRSNQKL
QSFLRFYGSSLEGNISKTIVTQLDTPKKAYSDMKNSKKINKTKAEVIIEENQKRMKAEEE
RKEQKQWDALSIEKLIQENFNSGISKLEDFLKKCQSNSVKCTAEMAGLNTCFEVWIEQCK
DQGKKVKDINVAVEVMRRIHSLLEKYKDVMEKTDYQKIVRCLRYFGFDNLTCTLDPSQIP
EDDRKEKKAKISKYAVGMGAARFQLQYMGHCLLREERTDRDPRIQHFIPDTWQRDLLDIV
DNNESAVIVAPTSSGKTYSSYYCMEKILKESNEGVVVYVAPTKALVNQVWATVYNRFNKT
LPDGMVVCGVFTRDYRHDALNCQVLVTVPQCLEILLLSPHRQQWAKRIRYVIFDEVHCLG
GEIGAEVWEHLLVMIRCPFLALSATISNPKHLTEWLQSVKRYWQHVESVREESSGSSVTT
KKGTKKQKNIKTVNKSYKVKLVLYGERYNDLEKYVCSLEDNDFKIHHYHPCAALTVDHID
KYGFPSDLAFSPRESILLYDSMVQVWENWPRADELDPEKFTHFKNKIVITKADARKYEEE
LKEELKNWIVHDNRMKANRVLKLLKPHPTYCSEKNMENNFPCFVEKLRQMDKLPALFFLF
DIKKVEKWAENIKNCLEKKQKSKQLPKTEKQIHLLTNRLKKMEKSMQKNHTVGMKITSSK
TDKMILEEAEHGNLMEKLGKITEIPPDCTYANSQAVDTEILQKVIHQVRFMTTNKTLKTL
ALRGIGYHHASVSQKGRQMVEMLFRMGFIQVVTATGTLALGINMPCKSVVFTQNSVYLDA
LNYRQMSGRAGRRGQDLLGSVFFYDIPLPKVDKLIKSNVPQLRGQFPLNISLALRLMLLA
AKADDKDDAKAKVLSVLKHSLLSFNQPRVVEILKLYFLFSLQFLVKEGYLDQEGNTMGFA
GLVSHLHYHEPSNLVLVSFLVKGLFHKLCQPTRKNSKTFSKEVMEQLVLVLANLFGRRYI
PASVIKSKQKFYQSKVFLEDLPEDFAVALHEYNNKIEENFGHFLFIISKMADMKQEYQLP
LSRTDFSGEECNDSKLVSHLMSCNEGRTAVSPFACLSGNMDSDLLHAETVNSVILRTVGI
TAGNIPVLCAKKFDNRRRMMPLNAYALDFYKHGSLKAMAQDNGIHEGAAYLLLKDFSLTI
KAISVSLSELCDDDEDNVVQAFHQLSDSYWEKLQKV
NT seq
5331 nt
NT seq
+upstream
nt +downstream
nt
atggcttctggaggaactgttcaagatggcagtgatgatgatggtggagatctcacagcc
caaaaccttgaacaaaaatctgtgtcttttgaagatccagtagaaaataaaagtggctgc
agtgacttttcaaatgtgttttgctgggaacaggagatacagcaggtttcaagggccagt
gattatagcagacaagacaagtacgatttcagaaatccagaactagacaaacatatagga
cttctggagaaaatatctgacttaattttgaacgacataccaaaagctgagtatgtaagt
ttactcaatgattacgttgaatctgagttttttctgattgatggagattcattattcatc
acctgcataagtgaacaaacattactgccaggacagaacctgcacttcttttacctggta
gaacgctttctactggatttaacaaacaaaggagcaaaatacatcattgttttcttcaag
gatgcagagcatgcatattacaggcatccgactctcctgtccttacgtactacactgatt
ctccatcttcagcacagtactgatgctgtcattcacactgaattttccaactttttagaa
gggaagtggcaatctttcctgcaagaaagttacccatattttataataatctctgatgat
ggactgactaaactacagacaagctttctcaatttatttatcattcatgccttgtcaaaa
agaatcaatgttgtccttacttctggacaagaatcagattttatcagagtttatggatat
catatccatggcatgtataggcacaaggaatttttctctcagcaccgagaagagattccg
tttgttttccaaacactggttaaagacttgcaggaatccagtacagcagcattactttct
ctctctggacattcaagtgtgaaggacatggaaaaagaggtttgtgagacattatcccag
ctcaagcatgtttggccagaaatatctgatattcgacacattgtctgcattgtcacatgt
gcactggggctgagaacgtacagtaggttacaaaagaaacaccaggctaccattcgaaaa
caggagaagagtagggaaataacaccagaagaagctgaagacctaatcaggatgtattgc
ctgagtgtggtttttcttttccatttacctctttcacaacgagctcgggttagattaatc
agttaccattggagtaaacaagctttcacatttatacaaatgcataaaggttgtgaattt
tttcttctgaaacacctgacaactgaaaagctgtggaaagtggatttcactcacttgcct
gatttaagtgatgatcttttgtggaagaatgttgcatattactatgaagtagaaaatgag
caaggattaaacttggatatgggggaaaaaattaagagagagtatgaatatctgtggagt
atcatatcaaaactagctggaaaggatgatgatggaaagtctttgcctctgaggagaact
tctacatcttttcttaaaaagagagcttcaccaattaaagaatccaagaatattcctaat
ctaggtctgatacccatgacatctatggttgtggatgaatttgctggggatattctaagt
agcctaccatttttaaaaagtgatgactctgctgttacttcacttattaaacaaaaagaa
tttgatgaaattcgacactggcattcaggaaagcttctcagtgatgattatgacagaaca
aagtccagttctcaaacaatgggcaaagatccgtgggcccttcgaagcaatcaaaagttg
cagtcttttctacgcttttatggatcatcactggaaggcaacatttcaaaaacaattgta
acccaactggatactccaaagaaggcttattctgacatgaagaacagcaaaaaaattaat
aagaccaaagcagaagtaattattgaggaaaaccaaaagagaatgaaagctgaagaggaa
agaaaagaacagaaacaatgggatgctctttccattgaaaagctaatacaagagaatttt
aactctggaataagtaaactagaggattttctcaagaagtgtcaaagtaattctgtgaaa
tgtactgcagaaatggcaggattgaatacttgctttgaagtgtggatagaacaatgcaaa
gaccaaggaaagaaagtgaaagatataaatgtagctgttgaagtaatgagaagaatccat
tccttgctggaaaaatataaagatgtaatggagaagacagattatcaaaagattgtcaga
tgtcttagatactttggatttgacaatttaacatgtactttagatccttcccagattcca
gaggatgacagaaaagagaagaaggcaaagatttctaaatatgctgttggcatgggagca
gctcggtttcagctacagtacatgggtcattgcctgttacgagaagagagaacagatcga
gatcccaggatccagcattttattccagatacatggcagcgagaccttcttgacattgta
gataataatgaatctgcagtgattgtagcccctacctcatcagggaaaacatactcctcc
tactactgcatggagaaaatcctgaaagaaagtaacgagggggtggttgtgtatgttgct
ccaacaaaggctcttgttaaccaagtgtgggctactgtttataatcgatttaacaaaacg
ctgcctgatggcatggtagtatgtggtgttttcacgagagattaccgccatgatgctctg
aactgtcaggtactagtgacggtgcctcaatgcttagaaatcctgctgctgtcacctcac
cgccagcaatgggccaaaaggatcagatatgttatatttgatgaggtccattgtcttggt
ggtgaaattggagcagaagtctgggagcaccttctagttatgattcgatgtccatttttg
gctctctctgcaactattagtaaccccaaacatcttactgagtggctacagtcagtaaag
aggtactggcagcatgttgaaagtgtaagagaagaaagctctggttcttctgtaactacc
aagaaaggcactaaaaaacaaaagaatatcaagacagtaaataaatcatataaggttaaa
ttggtgctttatggagagagatacaatgatctggaaaaatatgtgtgttccctagaggac
aatgacttcaaaattcatcactatcacccatgtgctgccctaactgtggaccatatagat
aaatatggcttcccttcagacctggctttttctccacgagaaagtattttactgtatgac
tccatggtacaagtctgggaaaactggccaagagctgacgagctagatcctgagaagttt
acacattttaaaaataaaatagtaatcacaaaagcagatgcaagaaaatatgaagaagaa
ttgaaggaagagctaaaaaattggattgtacatgacaaccgaatgaaggctaacagggtg
ctgaagttactcaaaccccatcctacctattgttcagaaaaaaacatggagaacaatttc
ccatgttttgtggaaaaactaagacaaatggataaactgcctgcattgttttttctattc
gacattaaaaaggtggaaaaatgggctgaaaatataaaaaactgtctggagaagaagcaa
aagagtaaacaactaccaaagactgaaaagcaaatacatttgctaacaaacagattgaaa
aaaatggaaaagtccatgcagaagaatcatactgttggcatgaaaattacatcaagtaaa
actgataaaatgatacttgaggaggctgagcatggaaatttgatggaaaaacttgggaag
ataactgaaatacctccggattgcacctatgcaaatagccaagctgttgatacagagatt
ttgcagaaggtgattcatcaagtgaggttcatgacaacaaataaaacactgaaaacactg
gcactgagaggaattggatatcatcatgcttctgtgtcacaaaaaggaagacagatggtg
gagatgctcttcaggatgggatttatccaggtggttacagctactggaacactcgcgtta
ggaatcaacatgccatgtaaatcggttgtcttcacacagaattctgtgtatttggatgct
ctgaactatagacagatgtccggacgtgctggacgacgtggtcaagacttgctgggaagt
gtgtttttctatgacattccattgccaaaagtagacaagcttataaaatccaatgtacct
cagctgagaggccagttccctctgaatatttccctggcactgagacttatgctgttggct
gcaaaagctgatgacaaagacgatgcaaaagcaaaggtattgtcagtgttgaagcattcg
cttctctccttcaaccagccaagagtcgtggagatattaaagctctactttttattttct
ttgcaatttcttgtcaaggagggatatttggatcaagaaggcaacaccatgggatttgct
ggacttgtaagccatctgcattatcacgaaccttccaatcttgtcctagtcagctttctt
gtgaagggcttgttccacaaactgtgccagccaacgaggaaaaactcaaagacattttct
aaagaggtgatggaacagctagtgctagtactggcaaatctgtttggaagaagatatatc
cctgccagcgttattaaatctaaacagaagttttaccagtcaaaggtgttccttgaagat
ctcccagaagactttgctgttgcattacatgagtataacaacaaaatagaggagaatttt
ggccattttttatttattatttccaagatggctgatatgaaacaagaataccaacttcct
ctttcaaggactgatttctcaggtgaagaatgcaatgactctaaactggtgtctcacttg
atgagttgtaatgagggaagaacagctgtttcaccttttgcatgcctgtctggaaacatg
gatagtgatttacttcatgcagagactgtcaacagtgtcatattacgcacagttggtatt
actgctggaaatattcctgtactttgtgcaaagaaatttgataatcgaagaagaatgatg
ccacttaatgcttatgcacttgacttctataaacatggttctttgaaagcaatggcacaa
gataatggtatccatgaaggagcagcttatcttctgctgaaagatttttcactcactatt
aaagctatcagcgtttctctaagtgaactctgtgatgatgatgaggacaatgttgtgcag
gcatttcaccaactcagtgacagttactgggaaaaactgcaaaaagtctaa
DBGET
integrated database retrieval system
