Chelonia mydas (green sea turtle): 102935592
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Entry
102935592 CDS
T02989
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102935592 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmy03021
]
102935592 (PCF11)
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102935592 (PCF11)
Transcription machinery [BR:
cmy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102935592 (PCF11)
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102935592 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
102935592
NCBI-ProteinID:
XP_027678823
LinkDB
All DBs
Position
1:20675256..20703263
Genome browser
AA seq
1748 aa
AA seq
DB search
MSGPESSAGGAEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPSTEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSTEESPAPTSTVS
SSGTSTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQ
QGATTMGSVQASSKQHVSQTPHMTVKAPHQTSVQSEKNRPSPSSQFHDVKVVNRDPRLNR
MAQHSSHVKDQSHRKEFLSTTSQSDIKANKTLQAEKQNLSKQEKLKSSEKTQKKELDQLD
AKSKSPSPLKSKLSHTKDAKSQECEGIKVSEISKRDPRLKKHLQEKPDGKDDDTKEKRKS
MERKEKEEHKTSEHRPVGSRNKVINGIVQKQDSITEESEKQGGKLGRSSNRKRSRSRSPK
SRSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKLRQSGPKQSHVEEFTLTTREERNSN
KRNLKQDARDPRRLKKTQEDRPQETANQHSTKSTPEPKENVENWQGSKSSKRWKSGWEES
KNPQQNDEHQVSSKSPHQRHREIWAASKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANERLTSGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGMKKKPLLS
DAELTYYEHKAKLKRTQVQHSFPRLDLLDPDDILGYDLTDALLSGIECEQTKGKRGGGQF
DRKEQFGERSRRHSPISGSRPYADDLSPLESRRRHDEQNSSKGTRSSKNFDPYDSWGESD
EFRDALRQQGKSTPEFQKIDGDGFCKFDNREERQMVGQSGVREEPRSPFSERFKRPRYED
PEKTPFIESPGSRFAGIDVKQRLGALMEDRPLFDGSPRQPAARGGGDGQAGHFVDGPSNN
SSSRIEGPPAQASLRFEGPLGQVGGGAASQFDGPLGQAGGGGALRFDGPPGQIGTLRFEG
PLGQVGAGGALRFESPLGQVGGALRFEGPVGGRRLEGPVGQTMGGLRFEGPHGQPSGGLR
FEGPHGQPMGPHGQPAGGLRFEGPHGQPMGPRGQPGSGLRFEGPHIQPMGHHGQPGSGLR
FEGPHGPPVGPHGQPGGGLRFEGPHGQSVGPHVQGGGGLRFEGPHVQPGLGPRFEGPSVQ
TGGGLRFEGPLGQTGPRFDGCHSSRFDSQPGQLSLLQRFDGLHGQPGPRFERAPGQQTPP
RFDGPPGQQPRFDTPIPQRFDGPQHQPGSRFAMPLGLQGPRFENVANPPASRLESYGQTG
PYSEHPNQTYNGPSHGMQFQRPEMFDASQGPNFNGPPGPGAQNFPNPLNRASGHYFDDKN
LQGPQYGNFNTLPNSMSVGNTQQPQQVPGLSVSSQPGPYSQGQTYLPVLAQNPGSFVQTQ
AGSLPLSYPDNHLGQLDVNELFSKLLSTGILKVSKTTDSTSAQVNETSTQPAPEEEEDDQ
EQSEDQDIPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYR
QNRTEKDISRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEK
EFQSVPAGPAGVDESCEICQEQFEQYWDEEEEEWHLKNAIRVEEKIYHPSCYEDYQKTSS
FDCTPSPSKTPVENPLNIMLNIVKQEIQEPCNSPKVKEEPVDTPATCMEESTPASTDIKT
ETDKVEPV
NT seq
5247 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcccggagagcagcgcaggcggcgccgaggcccgggaggacgcgtgccgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctccttctacagagaagcttcctgttatgtaccttatggattccattgtc
aagaacgttggaagagaatatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgaaattttccctttgaagaaactgtatgcccttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctacccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgactgaggaatctcctgcacctacttctacagtcagt
tcatctggtacctcaactcctccagctgttcctgaaattcagaagaatttgacccaagag
caactaataagacaacaactgctggcaaagcaaaaacagttgttggaacttcaacagaaa
aaattagagctggagctagaacagactaaagcccagttggcagtttctcttagtgttcaa
caaggggcaaccactatgggttcagttcaagcatcttccaaacaacatgtttcacagact
cctcatatgacagtcaaagctcctcaccagacttctgtgcaatctgaaaaaaacagacca
tctccatcttctcagtttcatgatgtcaaagtagtaaacagagatcctcgtcttaatagg
atggctcaacattcttctcatgttaaagatcaaagtcataggaaagaatttctgtctacc
acaagtcagtctgatatcaaggcaaacaaaacactgcaggctgaaaaacaaaatttgtca
aagcaagaaaagttaaaatcaagtgagaaaacacagaagaaagaacttgatcagttagat
gcaaaatctaaatcaccatcccctttgaaaagcaagttatcccatactaaagatgctaaa
agccaagaatgtgagggtataaaagtatctgaaattagtaaaagagatccaagattaaaa
aagcatcttcaagagaagccagatggtaaagatgatgacacaaaggaaaagaggaaaagt
atggagcgaaaagaaaaagaggaacataagacatctgaacacagacctgttggcagcaga
aataaagtaattaatggcattgttcaaaaacaggactctattacagaagagtcagaaaaa
cagggtggaaaacttgggagatcaagtaatagaaaaaggtcccgatcacgctctcctaag
tctcgatcgccatctacccattcaccaaagagaagagagaggagatcacccaaaagaaga
ctgaggagtttgtctcctacttcctcgactcctaaaattggaaagctccgtcagtcaggg
cctaagcaatctcatgttgaagagtttacactaactacaagggaagaaagaaattctaat
aagaggaaccttaaacaggatgcacgagatccaaggagattgaaaaaaactcaagaagac
agaccacaggaaactgcaaatcagcattctacaaagtccactccagaaccaaaggagaat
gtggaaaattggcaaggttccaaatcaagcaaaagatggaaatctggttgggaggaaagt
aaaaatccacagcagaatgacgaacatcaagtatctagtaaatctcctcatcagaggcac
agggagatctgggcggccagtaaaggaattttgtcacctcgagccccaaagcaacagcat
cgattaagtgtggatgccaatttgcagattcccaaagaattgacttctgcaagcaaacga
gagctacttaaaaaggcaaatgaacgtttgacatctggggaaataacacaagatgagttc
cttgttgtggctcatcagattcgtcaactgttccaatatcaggaaggaaagcacagatgc
aatgtgtgggatagtcctacagaagaaaaatgtggtatgaagaagaagccccttctgtct
gatgctgaattaacgtattatgaacataaagctaaactgaaaagaacacaagttcagcat
tcatttccaagacttgatctgttagatcctgatgatattttagggtatgatttgactgat
gcattgctttctggaatagaatgtgagcaaacaaaaggtaaacgtggaggaggacagttt
gacagaaaagagcaatttggagaaaggtcaagacggcattctcctataagtggcagtaga
ccttatgctgatgatctttcaccacttgagagccggcgaagacatgatgagcaaaattct
tcaaaaggaacaagaagttctaaaaacttcgatccttacgatagctggggagagtcagat
gaattcagagatgcactcaggcaacaagggaaaagtacaccagagtttcagaaaattgat
ggagatggattctgcaaatttgataatcgtgaagaaagacagatggttggacagagtggt
gttcgagaggaaccgagatccccattcagtgaacgtttcaagagacctagatatgaagat
ccagagaaaacaccatttatagagagcccaggatcaagatttgcaggcattgacgtaaag
cagagattaggtgcactcatggaagacagaccactatttgatggctcacctagacaacct
gctgcaaggggagggggagacggacaagctggtcattttgttgatgggccttctaataat
tcaagctctagaattgaagggccacctgcacaggcttctttgaggtttgaagggccacta
ggtcaggtgggaggaggagctgcctctcagtttgatgggccactgggacaggcaggggga
gggggtgccctgaggtttgatgggccaccagggcagataggcaccctcaggtttgagggg
ccccttgggcaagtaggtgcagggggtgcattaaggtttgaaagcccgctggggcaagta
ggaggtgccttaaggtttgaggggcctgtgggtggtcgcaggttagaggggcctgtaggc
caaactatgggtggtctcagatttgaggggcctcatggtcagccatcgggtggtctcagg
tttgagggaccccatggtcaacctatggggcctcatggccagccagcgggtggactcaga
tttgagggaccccatggtcagcctatggggcctcgtggtcaaccagggagtgggctcagg
tttgaggggccacatatccagccaatggggcaccatggtcaaccagggagtgggctccgt
tttgaggggccacatggtccgcctgtggggccacatggtcaaccgggaggaggtctgcgt
tttgaggggccccatggtcagtctgtagggccacatgtccagggagggggtggtctcagg
tttgaaggtccacacgtccagccaggacttggtcctaggtttgagggtccatcagtccag
accgggggtggacttagatttgaagggcctttgggtcagactggtccaagattcgatggt
tgtcattcgtccagatttgatagtcaacctggtcagttatcccttttgcaaagatttgat
ggtttacatggacaacctggcccaagatttgaaagggcacctggtcaacagacacctcct
aggtttgatggaccacctggtcagcagccacgattcgatacaccaatacctcaaaggttt
gatggtcctcaacaccagccaggttcaaggtttgcaatgccccttggtcttcaaggtcca
aggtttgaaaatgtagctaaccctcctgcctcaagactggaatcttacgggcaaactggt
ccatacagtgaacatcccaatcagacttacaacggaccatcccatggtatgcaattccag
agacctgaaatgtttgatgcctctcaaggaccaaattttaatgggccacctggccctgga
gcacagaactttcccaatccacttaacagagcatctggacattattttgatgataagaat
cttcagggtcctcagtatggaaactttaataccttgcctaattctatgtcagtaggaaat
actcagcaaccacagcaggttcctggtctatctgtatcttctcaacctggaccttacagt
caaggacaaacatatttaccagtacttgcacaaaatcctggaagctttgttcagactcaa
gcaggatcccttccactttcatatcctgataatcaccttggccagcttgatgtaaatgag
ttgttctctaaactgctttcaacaggaatcctcaaagtgtcaaaaactactgattccact
tcagcacaagtgaatgaaacttcaacccagccagctcctgaggaggaggaggatgaccag
gagcagagtgaggatcaagatatcccagacctcactaactttacagttgaagaactaaaa
cagcgttatgatagtgttataaatcgactgtacactggtattcagtgttactcctgtgga
atgaggtttacaacttcacagacggatgtatatgcagatcacttggactggcattaccga
cagaatcgcactgaaaaggacattagcagaaaagttactcacagaaggtggtactacagt
ttaacagactggatagaatttgaagaaatagctgatctagaggaacgtgcaaagagccag
ttctttgaaaaagtacatgaagaagttgtattgaagacacaagaagctgctaaagaaaaa
gagtttcaaagtgttcctgctggaccagcaggagtagatgagagctgtgaaatttgccaa
gagcaatttgaacagtattgggatgaggaagaggaagagtggcatctaaagaatgctatt
agggtagaggaaaagatttaccatccatcatgttatgaagattaccaaaagacatcgtca
ttcgattgtacaccatctcccagcaagacccctgtggaaaacccactaaatattatgttg
aacattgtcaaacaagaaatacaggagccctgtaacagtcctaaagtcaaagaagaacct
gtcgacacccctgctacttgtatggaagagagcacgcctgcgtctacagatattaaaaca
gaaactgataaggttgaaccagtttaa
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integrated database retrieval system
