Chelonia mydas (green sea turtle): 102938419
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Entry
102938419 CDS
T02989
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03013
Nucleocytoplasmic transport
cmy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102938419 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
102938419 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102938419 (THOC1)
03041 Spliceosome [BR:
cmy03041
]
102938419 (THOC1)
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
102938419 (THOC1)
Spliceosome [BR:
cmy03041
]
Complex C
Other components
EJC/TREX
102938419 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102938419 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
Motif
Other DBs
NCBI-GeneID:
102938419
NCBI-ProteinID:
XP_037748702
LinkDB
All DBs
Position
2:complement(81112083..81147242)
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AA seq
656 aa
AA seq
DB search
MSPPLFSLPEARLRFTNSTRDALTNRTIKPLLNAFNQIPGSENEKKCTLDQSFRVVLEEE
IINQASCENVLAIISLAINGVTDGICTASTPFVLLGDVLDCLPLDQCDKIFTFVEKNVTT
WKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LENVTVFNTNEQESTLGQKHIEERDEGMEVEEGEMGDDEAPTSCSIPIDYNLYRKFWSLQ
DYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKLEELKTGGEHVYFAKFL
TSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKLVYQ
LLSENPPDGERFSKMVEHILNTEENWNTWKNEGCPSFVKERPSDSKPTRLVRKRPAPEDF
LGKGPNKKILMGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENMVEN
EYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEIKT
GEDEDEEDNDALLKENNESPDVRRDKPMTGEQIESFANKLGEQWKTLAPYLEMKDSDIRQ
IESDSEDVKMRAKQLLVAWQDQEGIHATPENLITAVNKAGLSDLAESLTNDTENSS
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccgctcttcagcctccccgaggcgcggctccgcttcacgaattctactcga
gatgctttgaccaacagaactatcaaacccttattgaatgcattcaaccagattcctgga
agtgaaaatgaaaagaaatgcaccctggatcaatctttcagagttgttttagaagaggaa
attataaaccaagcctcatgtgaaaatgtcttggctattatttctcttgctattaatgga
gttacagatggtatctgtacagcatcaaccccttttgttcttctgggagatgttctggat
tgcctgcctttggatcagtgtgacaaaatttttacctttgtcgaaaaaaatgtcactaca
tggaaatcaaatacattttattcagctgggaagaactacttgctgagaatgtgcaacgat
ctcctaagaagattatctaaatcacagaacactgtcttctgtggaagaattcagctattc
ctggctagattatttcctctttcagagaagtcaggactcaatttgcaaagtcagtttaat
ctggaaaatgtcacagttttcaatactaatgaacaagagagcactctaggacagaagcac
atagaggagagagatgaaggaatggaagtagaagaaggtgaaatgggagatgatgaagcg
cctacaagttgctccattccaatagattacaacctgtatagaaaattctggtcgcttcag
gattactttaggaatcctgtgcagtgctatgagaagatctcgtggaagacatttcttaag
tactccgaagaagttttggctgtttttaaaagctacaaattggatgacacacaggcctcc
agaaaaaagttggaagaactaaaaacagggggagaacatgtctactttgcaaagttctta
actagtgaaaagctaatggatttacagctgagtgacagtaacttccgccgtcacatcttg
ctacagtatctaatactatttcagtatctaaagggacaggtcaaatttaaaagttcaaac
tatgttctaactgatgaacagtccctctggattgaagatactacaaaactggtttaccag
cttctttcagaaaaccccccagatggggaaagattctcaaaaatggtagagcatatatta
aacactgaagaaaactggaacacctggaaaaatgaaggctgcccaagttttgtgaaagaa
agaccatcagattccaagccaacaagacttgtgagaaagaggccagctccagaggatttc
ctagggaaaggaccaaacaaaaaaattctcatggggaatgaggagctaactcggctttgg
aatttatgtccggacaacatggaagcttgtaaatctgagactagggaatatatgccgaca
ctggaggagttctttgaagaggctattgagcaggcagatcctgaaaacatggttgaaaat
gagtataaggctgtgaacaactctaattatggatggagagcattaagattactagcacgc
agaagtccccacttcttccagccaaccaatcaacaatttaagagtttaccagaatactta
gaaaacatggtaatcaaattagctaaggagttgcctcctccttctgaagaaataaaaaca
ggagaggatgaagatgaggaagataatgatgctttattaaaggaaaacaatgaaagtcca
gatgtacgacgagacaaacccatgacaggggaacaaattgaatcgtttgctaacaagctt
ggagaacagtggaagactctggccccctacctggaaatgaaggactctgatataagacag
attgaatcagatagtgaggatgtgaagatgagagcaaagcagctgctggttgcctggcag
gatcaagaggggatacatgcaacacctgagaatctgattactgcagtgaacaaagctgga
ttaagtgaccttgcagaaagcctaactaatgacactgaaaacagtagttaa
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