Chelonia mydas (green sea turtle): 102939480
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Entry
102939480 CDS
T02989
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03013
Nucleocytoplasmic transport
cmy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102939480 (UPF1)
03015 mRNA surveillance pathway
102939480 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102939480 (UPF1)
Enzymes [BR:
cmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102939480 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102939480 (UPF1)
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102939480 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102939480 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102939480
NCBI-ProteinID:
XP_037741958
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All DBs
Position
25:complement(14274307..14302453)
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AA seq
1118 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPAHGGPGQGPP
GPGQGPPGQIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHAC
SYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLEC
YNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLV
KIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQ
NIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEIC
LRYKGDLAPLWKGIGHVIKVPDSSSDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSF
DRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVK
TVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK
VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKR
TAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILV
GDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGS
LQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL
LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILS
CVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVE
GPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYF
QTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGR
QKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQD
SYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagactctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccgcacacgggggcccggggcagggcccgccg
ggcccggggcaggggccgcccggacagatcgaggcacaggttaatggtcctgatgggatc
ctccagaatggtgcagtggatgataatgtagctaaaaccagtcaactgcttgcagaatta
aactttgaagaagatgaagaagatacctattacaccaaggatcttcctgtgcacgcttgc
agttactgtggtatccatgacccagcttgtgtggtttattgcaataccagcaagaagtgg
ttctgtaatgggcgtggaaatacatctggcagccacattgtaaatcatctcgtgagagca
aagtgtaaagaggtgactcttcacaaagatggccctttgggagagactgtcttggagtgt
tataattgtggatgtcgtaatgtgttcctccttggcttcattccggctaaggctgactcg
gtagtcgtattactatgcaggcaaccgtgtgccagtcagagcagtttaaaggatattaat
tgggacagctcacagtggcaacctcttatccaagaccgctgtttcctttcctggctggta
aagattccttctgaacaggagcagttgagagcacgtcagattacagctcaacaaattaac
aaactggaagaactctggaaggaaaatccatctgcaacccttgaagacttggaaaaacct
ggtgttgatgaagaaccgcagcatgtcttacttagatatgaggatgcttatcagtaccaa
aatatttttggacctctagtcaagcttgaagcagattacgacaagaaactcaaggagtcc
cagacccaagataacatcacggtgaggtgggacctgggcttgaacaagaagagaattgct
tacttcactttgccaaagactgactcagatatgcgtcttatgcagggagacgaaatctgc
ctgagatataaaggagacctggcccctttgtggaaaggaattggtcatgttattaaagtt
cctgatagctcttcagattatggtgatgagatagctattgagctgaggagcagtgttgga
gcacctgtggaggttactcataacttccaagtggattttgtgtggaagtccacttcattt
gacagaatgcagagtgctttaaaaacatttgccgtggatgaaacttcagtttctggctac
atctaccacaaactgttaggtcatgaggtagaagatgtgattattaaatgccagctgcca
aagcgttttacagcacaaggacttcctgacctcaaccattctcaggtttatgctgtaaag
actgtcttgcagcgtcctctgagccttatccaaggtccccctggtacaggaaaaactgtg
acatcagccactattgtctaccatttagctaggcagggcaatgggcctgtgttagtttgt
gccccaagtaacatagctgtggatcagctcactgagaagatccatcagacaggactaaaa
gtcgttcgtctatgtgctaaaagccgtgaggcaattgattctcctgtatctttcctggca
ttgcacaaccagatcagaaacatggatagtatgcctgagctccagaaactgcagcagctg
aaagatgaaactggagaattgtcatctgctgatgagaaacgctatcgtgcactgaaacga
acagcagagcgtgaattacttatgaatgcagatgttatttgctgcacatgcgtgggagca
ggtgacccaagacttgcaaaaatgcagtttcgttccattttaattgatgaaagcacacag
gctactgaaccagaatgtatggtgccagttgttctgggagccaaacagctgatccttgta
ggtgatcactgccagcttggtcctgttgtgatgtgtaaaaaagctgcaaaggcaggcctg
tctcagtccctttttgagaggcttgtggtgctgggtatccgtccaattcgcctgcaagtg
cagtatcgtatgcaccctgcacttagtgcttttccatccaacatcttctatgaggggtca
ctccagaatggtgttactgcagcggaccgtgtgaaaaagggatttgatttccaatggccc
cagccagataagccaatgtttttctatgtgacacagggtcaagaagaaattgccagttca
ggcacctcttacttaaacaggacggaagctgctaatgtggagaagataactacaaagtta
ttgaaagcgggtgccaaacctgatcagattggcattattactccctatgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggttccttgcatacaaaactctatcaggaa
gtggaaatcgcaagtgttgatgctttccaaggtcgagagaaggactttattatcctttct
tgtgtaagagccaatgagcaccaaggaattggatttttaaatgatcccagacgtcttaat
gtggctcttaccagagcaaggtatggagtaattattgttgggaacccaaaagctctgtct
aaacagccgctttggaatcacctgctgaactactacaaggagcagaaggtactggtagag
ggaccactaaacaatctccgagaaagccttatgcagttcagcaagccccgtaaactcgtc
aataccatcaacccaggtgcccgtttcatgactactgccatgtatgatgcacgtgaagct
attatcccaggatctgtctatgaccggagcagtcaaggccgcccatcgaacatgtacttc
caaacacatgatcagattggaatgattagtgctggacccagccatgtcactgctatgaac
attcctatccctttcaaccttgtgatgccaccaatgccaccaccaggatattttgggcag
gctaatggaccggcagcaggacgtgggacacctaaaggaaagactggtcgtggtgggcgc
cagaaaaatcgttttgggattcctggaactagccagtcaaaccttccaaacagtcaagcg
agccaagatgtggtgtcccagccattctcccagggtccactgactcagggttatatctcc
atgagtcagccatcgcagatgagccagccaggactctcccagccagagttatcacaggac
agttaccttggggatgagtttaaatctcagattgatgtggcgctgtcgcaggactctact
taccagggtgaacgtgcatatcaacatggtggagtgacaggactgtcacagtattag
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