Croceicoccus naphthovorans: AB433_08600
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Entry
AB433_08600 CDS
T03964
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cna
Croceicoccus naphthovorans
Pathway
cna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB433_08600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cna03019
]
AB433_08600
03016 Transfer RNA biogenesis [BR:
cna03016
]
AB433_08600
Enzymes [BR:
cna01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AB433_08600
Messenger RNA biogenesis [BR:
cna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB433_08600
Transfer RNA biogenesis [BR:
cna03016
]
Prokaryotic type
tRNA degradation factors
AB433_08600
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
HTH_12
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AKM10022
UniProt:
A0A0G3XFU8
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All DBs
Position
1689899..1692196
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AA seq
765 aa
AA seq
DB search
MARTPKRPTGLPNKEQVMEFIRSSDTPAGKREIAKAFGLKGQEKIALKALLKDMADEGLI
DGDRRAFHRMGGVPKVTVLRVVAIEEGDAIAIPDNWQPDDAMPPPRIRLIESKGRGKSRQ
MPALRKGDRVLARTEETGTGYLAHPMKKLPQVHDSLMGVVEIDGSGKGWLAPIDKSVRSS
VPIADLGGAEKGNLVLAEPAGKSPRAGVRVVELLGDPLAPKSYSLIAIHKHDIPYVFPAE
ALSEADIAAKLPLSEDKREDLRALPIVGIDPADARDHDDAIWAMPDDDPANAGGWKALVA
IADVSFYVRPGSAVDREARKRGNSVYFPDRVVPMLPEVLSAEVCSLGEGEARAAMACHMT
IDRDGRVRDWRFTRAIVQIAEVIAYEDAQARIDDGSAADHLKHLWACWKVLHGAREARDP
LDLDLPERRVVLDEKGRIAEIAVRERLDAHKVVEEFMIAANVAAAKALEAKAAPVVYRVH
EPPSREKLVALKDYLATMDRNLALGQVITPSLFNRLIKDVSDEAEKALVMEQVLRSQTQA
YYGPKNAGHFGLALGSYAHFTSPIRRYSDLLVHRALVEAYGLEQPKPKDATIPAHSGLSD
RDRASLERVTDAISKTERRAMEAERDTIDRYVAAWLSGKVGETFDTRVTGVQKFGLFATI
LGFGGDGLVPVSVLGDERFHYDDRAQVLRGERTGTEYRSGDRMKLRLAEANPLTGALKFE
PPEFEGRIEPRGGRPQGKPKRQNKTGYMQGKRGRPGNIRHSGKRK
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtacacccaagcgcccgaccggcctgcccaataaagagcaggtcatggagttc
atccgcagttccgacacgcccgccggcaagcgagagatcgccaaggccttcgggctgaag
gggcaggagaagattgcgctcaaggcgctgctgaaagacatggcagacgaaggcctgatc
gacggcgaccgccgcgcgttccatcgcatgggcggcgtgcccaaggtgacggttttgcga
gtggtggcaatagaggaaggcgacgcgatcgccattcccgacaactggcagcccgacgac
gccatgccgccgccgcgcatccgtctgatcgaaagcaagggccgcggcaaatcgcgccag
atgcccgcactgcgcaagggtgaccgggtgctggcgcgaaccgaagaaaccggcaccggc
tatctcgcgcacccgatgaagaagctgccgcaggtgcacgacagcctgatgggcgtggtg
gagatcgatggcagcggcaagggctggctcgcgcccatcgacaaatcggtgcggtcgtcg
gtgcccatcgcggaccttggcggggcggagaagggcaaccttgtgctggccgaaccggcg
ggcaaaagcccgcgtgcgggggtgcgcgtggtggaattgctgggcgatccgctggcgccc
aagtcctactcgctgatcgcgatccacaagcacgacataccctatgtcttcccggcagag
gcactgtccgaagcggacatcgccgcgaaactgccgctgagcgaggacaagcgcgaagac
cttcgtgcgctgcccatcgtcggcatcgatcccgccgacgcgcgcgatcatgacgatgcg
atctgggccatgcccgatgacgacccggcgaacgcgggcggttggaaggcgctggtcgcg
attgccgatgtgtcgttctatgtccgccccggatcggccgttgaccgtgaggcgcgcaaa
cgcggcaattcggtctatttccccgaccgcgtcgtgccgatgctgcccgaggttctgtct
gccgaagtatgctctttgggtgagggcgaggcgcgggcggcgatggcctgtcacatgacc
atcgaccgggacgggcgcgtgcgcgactggcgctttacccgcgcgatcgtgcagatcgcc
gaagtcattgcctatgaggatgcgcaggcacggatcgacgacggatcggcggcggatcat
ctcaaacacctttgggcctgctggaaggtgcttcatggggcgagagaagcgcgcgatccg
ctcgatctcgacctgcccgaacgccgcgtggtgctggacgaaaagggccgtatcgccgag
atcgcggtgcgcgaacggctggacgcgcacaaggtggtcgaggaattcatgatcgccgcc
aatgtcgcggcggccaaggcgctggaggcaaaggccgcgccggtcgtctatcgcgtgcac
gaaccgccgagccgggaaaagctggtcgcattgaaggactatctcgcgacgatggatcgc
aacctcgcgctgggccaagtgatcacgccttcgctgttcaaccgcctgatcaaggacgtg
tcggacgaggcggaaaaggcgttggtgatggagcaagtgctgcgcagccagacgcaggcc
tattacgggccgaagaacgccgggcatttcgggctggcgctggggtcttacgcgcacttc
acctcgccgatccgccgctattcggacctcttggtgcatcgcgcgctggtcgaggcctat
ggcttggaacagcctaagccgaaagacgcgacgatcccggcgcattcgggcctttcggac
cgcgaccgcgcttcgctggagcgcgtgaccgacgccatcagcaagaccgaacgccgcgcg
atggaggcggagcgcgataccatcgaccgctatgtcgcggcgtggctgtcgggtaaggtg
ggtgagacctttgatacccgcgtgacgggcgtgcagaaattcggtctgttcgccacgatt
ctcggctttggcggagacggactggtgccggtatcggtgcttggcgacgagcgattccat
tacgatgatcgcgcgcaagtcctacgtggtgagcggacgggcaccgaatatcgctctggc
gacagaatgaagctgcgtctggccgaggccaatccgctgactggcgcactgaaattcgaa
ccgccggaattcgaaggccgaatcgaaccgcgtgggggcaggccgcaggggaaacccaag
cggcagaacaagaccgggtacatgcagggaaagcgcggacgccccggcaatatccgccat
tcgggcaagcggaagtag
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