Caldicellulosiruptor naganoensis: OTJ99_001642
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Entry
OTJ99_001642 CDS
T08720
Name
(GenBank) SigB/SigF/SigG family RNA polymerase sigma factor
KO
K03091
RNA polymerase sigma-E/F/G factor
Organism
cnag
Caldicellulosiruptor naganoensis
Brite
KEGG Orthology (KO) [BR:
cnag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnag03021
]
OTJ99_001642
Transcription machinery [BR:
cnag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OTJ99_001642
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_3
HTH_23
HTH_28
HTH_16
Sigma70_ECF
KORA
DUF3881
Trp_repressor
HTH_31
HTH_25
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
WAM30857
LinkDB
All DBs
Position
complement(1645987..1646688)
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AA seq
233 aa
AA seq
DB search
MSKVSQEELISKAKNGDKKARQELIENNLALVWSIVKKFAIKGIEADDLFQIGCIGLIKA
VDRFDPSFNVRFSTYAVPMIIGEIKRYLRDDGKIKISRKIKENQNKLKRFRDEFLFQNGR
EPTISEISETTGLSQDDILLCIDASLDVTSLNEVINQEEGKPITLMDIAADEDYSSRLLD
IMALKKGLRKLKGRKRYIILMRYFKNKTQSEIAKELNISQVHVSRIEKKHWKV
NT seq
702 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaagtttcccaggaggaattgataagtaaggcaaagaacggtgataaaaaggcg
cggcaagaactcattgaaaacaatcttgcgcttgtgtggagcattgtcaaaaagtttgca
atcaaaggaattgaagctgacgatttgttccagataggatgtattggacttatcaaagca
gttgataggtttgacccaagcttcaatgtcagattctcaacatatgctgtgccaatgata
attggagaaataaaaaggtatttacgagatgatggtaaaataaagatttcacgaaagata
aaggaaaaccaaaacaagctcaagagatttcgcgatgagtttttatttcaaaacggcaga
gagccaacaattagcgagatttcagagacaacaggtttgagccaagatgatattttgctt
tgcatagatgcatcacttgatgtcacatctttaaatgaggttataaaccaagaagaagga
aagcctatcacacttatggacattgcagctgatgaggactactcaagcagacttttagac
ataatggctttgaaaaaaggattgagaaaattaaaaggacgtaaacgctacataatactt
atgcgctactttaaaaacaaaacacagtctgagattgcaaaagaactcaatatctcacaa
gtgcatgtttcgaggattgaaaaaaagcattggaaagtataa
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