Cryptococcus neoformans var. neoformans B-3501A: CNBC4250
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Entry
CNBC4250 CDS
T01040
Name
(RefSeq) hypothetical protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cnb
Cryptococcus neoformans var. neoformans B-3501A
Pathway
cnb03013
Nucleocytoplasmic transport
cnb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cnb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CNBC4250
03015 mRNA surveillance pathway
CNBC4250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnb03019
]
CNBC4250
Enzymes [BR:
cnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CNBC4250
5.6.2.5 RNA 5'-3' helicase
CNBC4250
Messenger RNA biogenesis [BR:
cnb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CNBC4250
mRNA cycle factors
Common to processing body (P body) and stress granule
CNBC4250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
UvrD-helicase
ResIII
SLFN-g3_helicase
DEAD
AAA_16
AAA_22
Helicase_RecD
nSTAND3
PhoH
ATPase
AAA_25
Ribosomal_S13_N
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
4935090
NCBI-ProteinID:
XP_776499
LinkDB
All DBs
Position
3:complement(1161817..1165763)
Genome browser
AA seq
1089 aa
AA seq
DB search
MEFSNFEGASQYGPDIDDNTSLYSSIPPSVVTAPTISGDIASQLGDLNLGETTSGHAAAG
QVYIDDFDEEIERNSFGEGVEHACSYCGIHNPQCVVKCLHCNKWFCNSRGNTSASHIVNH
LVKAKHKEVILHKESALGDTIPECYNCGSKNVFMLGFIPAKSDTVVVLLCRQPCAALTSS
RDINWDTSQWSAIIDDRQFLSWLVKVPSEAEQLRARQISLAQISKLEELWRENPNAKLED
AEAQSGEEEMQPILLKYEDAYQYQNILGPLVKVEADYDKRMKESQTENDITIRWDMGLNQ
KRLAWFCMPKLESGEVRLAVGDELKLKFAGTTSSVGIKGLQAFNKAGWGSSGDAVWEGVG
SVVKIPNNASDEICLELRRNDGVPFDCTHGFSVDFIWKSTSFDRMQAAMKTFAIDEKSVS
GYIYHKLLGHEVEPQVLRTQMPKRFAAPNLPELNHSQMSAVKAVLQKPLSLIQGPPGTGK
TVTSASIVYHLAKMNPGQVLVCAPSNVAVDHLCEKIHQTGLKVVRLAAKSREALDSSVDF
LSLHSQVANADTHHELQKLIQLRNDQGELSQSDERKYKALVKACEKDILNAADVICTTCV
GAGDPRLAKFKFRTVLIDEATQSAEPECMIPLVMGCKQAVLVGDHQQLGPVIMNKKAARA
GLSQSLFERLVILGNHPIRLQVQYRMHPCLSEFSSNLFYEGTLQNGVTAPERLRKHVDFP
WPVADTPMFFHQNLGTEEISSSGTSFLNRTEASNVEKMVTKFFKSGVLPNQIGVITPYEG
QRSYIASYMQLHGSLKKDLYKEVEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRR
LNVALTRAKYGVVILGNPKVLSKHPLWLYLLSHYKEKGCFVEGPLSNLQPSMVQFSRPKK
SLAAAMDPFKRHMGHGQGQSAAANRFDPAYYRTHNPLSFIPSDAQSVVSQAMTSSAFPLF
GGVGGGVGGGGGGKNKTYTGYASSVVSQQPIDGGNASAFAPPRAGQSQFDRFASIVGSAG
SAGSAGAGGAGAGAGAGGGGGGGNVMMGKGRRLSIGSEAASASMYAYGYKAGEDDTQSIA
PSQAGMTEF
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atggagttttccaactttgaaggggcatcacagtatggtccggacatcgatgacaacact
tcattatactcgtcaattccgccttcagtagttacagcgcccactatcagtggcgatatt
gccagtcagctcggcgaccttaatctcggcgaaactacgtcagggcatgcagcagccggt
caagtctatatagacgattttgacgaggaaatagagcggaattcatttggagaaggagtc
gagcatgcttgcagctactgtggtattcataatccccaatgtgttgtcaagtgtcttcac
tgtaataaatggttctgtaattctcgtggaaatacatctgcttcgcatatcgtaaatcac
ctagtcaaggcgaagcacaaagaagtgatcctacacaaggaaagcgctcttggagatacc
atcccagaatgctacaactgtggcagtaaaaatgtgtttatgctagggttcattcccgcg
aaaagtgacactgttgtcgttttactttgccggcaaccttgtgcagccttgacgagttcc
cgggatatcaattgggatacctcacagtggtcagctatcatcgatgatcgtcagtttctc
tcttggctcgtcaaggtaccgtcagaggccgagcaacttcgagcgagacaaatttctttg
gcccaaatatcaaaacttgaagaactttggagagaaaatcccaatgcaaagcttgaagat
gcggaggcacagtctggcgaggaggagatgcagccgatcttgctcaaatatgaggatgcg
taccaatatcagaacattctcggtcctctggttaaagtcgaagctgattatgacaagcgc
atgaaagaatcccaaaccgagaatgatatcacgatacgatgggatatgggtcttaatcaa
aagcgtcttgcatggttttgcatgccgaaactcgaaagcggagaagttagattggcagta
ggcgatgagttgaagctcaaatttgcggggacgaccagcagcgtcggaattaaaggtctc
caggcgttcaacaaagcgggttggggaagttccggagatgcagtatgggagggagttggg
agtgtcgtcaagataccgaacaatgcatcggacgaaatttgcttggagcttcggagaaat
gacggagtgcctttcgattgcactcacggcttttctgtcgactttatttggaaatcgacc
agtttcgacaggatgcaggcggccatgaaaacgtttgcgatcgacgagaagagtgtgagc
ggctatatctaccataaattgctcggacacgaagtcgaaccccaagtgcttcgcactcag
atgcccaaacgttttgctgcccctaatcttccagagcttaaccactcgcaaatgtctgcc
gtcaaggccgtattgcaaaaaccgctgagtctcatccaaggccctccaggaactgggaaa
acggtgacttctgcttctatcgtatatcacctcgccaagatgaatcctggccaggttctg
gtatgcgcgccttccaacgtagctgttgaccatctttgcgaaaagattcaccagacgggt
ctcaaggtcgtgcgattagcagccaaatcacgagaagcgcttgattcatcggttgacttc
ctctcccttcacagtcaagtagccaacgcagacacgcaccacgagttgcagaaactcatt
caactgagaaatgaccaaggagaattaagtcagagcgacgaaagaaagtacaaggcgttg
gtcaaagcgtgtgagaaggacattttgaacgcggcggatgttatctgtactacgtgtgtc
ggtgcgggtgatcccaggctggccaagttcaaatttagaacagttttgatcgatgaagct
actcagtctgccgagcctgaatgtatgatccctcttgttatggggtgtaaacaagctgta
ctggtgggcgatcaccaacaattgggaccagtcattatgaacaagaaagcagcacgcgct
ggtctttcgcaatccttgttcgaacggctcgtcatcctgggcaaccaccctatccgactg
caggtgcagtaccggatgcacccctgcctttccgagttttcatccaacctgttctacgag
ggcactttgcagaatggtgtcacggcaccagaaaggctgcgtaagcatgtagatttcccc
tggccagttgcggacacgccaatgttcttccatcagaaccttggtacggaggaaatatca
tcaagcggaacatctttcctcaacagaaccgaagcttccaatgttgaaaagatggtgacc
aaatttttcaagtctggcgtcttacccaatcagattggtgttattacgccatacgaagga
cagcgatcgtacattgcgtcgtacatgcagctacatggctcgctgaaaaaggatctatac
aaagaagtcgaggtggcgagtgttgatgcgttccagggtcgtgagaaggattatatcatc
ttgagttgtgtgagaagcaacgagcaccagggtatcggatttttaaatgatcctagaaga
ctgaacgtggctcttacccgtgccaagtacggcgtggtgatcttgggtaatccaaaggtg
ctgagcaagcatcctctttggctttacctcctttcccactacaaggagaaggggtgcttt
gttgaaggccctctcagtaaccttcagccgagtatggtccagttcagccgaccgaaaaag
tctttggcagcggctatggaccctttcaagagacatatgggtcatggacaagggcaatcc
gctgccgcaaatcgtttcgatccagcctattaccgtacccataaccctctttcgtttatc
ccgtctgatgcgcaatcggtagtcagccaagcaatgaccagctctgctttccccttattc
ggtggtgttggcggtggtgttggtggtggtggcggtgggaagaacaagacgtatacggga
tacgcttcaagtgtcgtttcccaacaaccgatagacggcggtaacgctagcgcatttgca
cctcctcgcgccggacaatcacaatttgacaggtttgccagtatcgtcgggtcggcgggg
tcggccgggtcggcgggtgcggggggcgcgggtgcaggcgctggcgctggcgggggcggg
ggcgggggcaacgtgatgatggggaaggggaggcggctttcgattgggagcgaggcggca
agcgcgtcgatgtatgcgtacggctacaaggcgggtgaggacgatacgcagagtatcgca
ccgagccaggctggtatgaccgagttttag
DBGET
integrated database retrieval system
