Cryptococcus neoformans var. neoformans B-3501A: CNBH1580
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Entry
CNBH1580 CDS
T01040
Name
(RefSeq) hypothetical protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cnb
Cryptococcus neoformans var. neoformans B-3501A
Pathway
cnb03022
Basal transcription factors
cnb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cnb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CNBH1580
09124 Replication and repair
03420 Nucleotide excision repair
CNBH1580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnb03021
]
CNBH1580
03400 DNA repair and recombination proteins [BR:
cnb03400
]
CNBH1580
Transcription machinery [BR:
cnb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CNBH1580
DNA repair and recombination proteins [BR:
cnb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CNBH1580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
DZR
Motif
Other DBs
NCBI-GeneID:
4937678
NCBI-ProteinID:
XP_773703
LinkDB
All DBs
Position
8:466578..468323
Genome browser
AA seq
460 aa
AA seq
DB search
MPLDLNYAPGSEDEEEDNIDDEDFPGPSSRRQARGAAGKGKGKNKDTGRQAWEGEYQKSW
DIVQEDESGSLESAVETLLARGRRKRALMSDTPVRRSIIRHVFIIIDLSESMLDKDYRPT
RFEVILGYLRTYVVEWFDQNPLGQIGVIAMRDRLSEVLIPMGGNPEEIVRALSDKRKLEP
SGEPSLQNGLVMAKGGMAHLPSTSSLEILVIFSAISTADPDGPITIHNVLDTLATGHIRT
SILSLSGEIKICKQIAERTGGKFGVALDQEHLKDLLWETIPPPATTIAPVTANVRSALAA
GGRGPNQTGERAPAGDLMVMGFPIRLPLGGETMCACHGLLRKGGYLCPRCGSKLCDVPTD
CEVCGLMVVSSPHLARSFWFLFPVANYGPLSIEDVVESSETCFGCDSEFSDATAINAGVA
QVEDGVSPTGRYRCAKCKHDFCADCDLYIHDTLHTCPGCS
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcgatctcaactatgcaccagggtctgaagatgaagaggaggacaacatcgat
gacgaggacttcccaggcccatcttcacggaggcaagctagaggagctgctggaaagggc
aagggcaagaacaaggacaccggaaggcaggcttgggaaggggagtaccagaagtcatgg
gatatcgttcaagaggatgagagcggctccctagagtctgccgtagagactctgcttgca
cgaggcagacggaaaagagcgttgatgtcagatactcccgtgagacggtctattatccgg
cacgtgttcattatcatcgacttgtcagaatccatgttagataaggactaccggccgaca
agattcgaggtcatcctaggatacctccgaacatatgtcgtcgagtggtttgatcagaat
cctctaggccagatcggtgtcattgccatgcgtgatcgattatcagaagtcttgataccc
atgggaggcaatcccgaagagattgttcgcgccctttcggacaagcgtaaactcgaaccg
tcaggcgaaccgtccctccaaaacggtcttgtcatggccaagggcggtatggcccattta
ccctctacctcttcccttgaaatcctcgtcatcttctccgctatatccaccgccgacccc
gacggaccgatcactattcacaatgtgctcgatactctggcaacagggcatatacgtaca
tccatcctctctctctcgggagaaatcaagatttgtaaacaaattgccgagcggacggga
ggtaaattcggtgtagctctggatcaagaacatttaaaagatttgttatgggaaactatc
cctccgcccgcgacgaccatcgcacccgtcacagccaatgtccgttcagcactcgccgct
ggtggccgtggtccgaaccaaacaggggagcgagcgcctgcaggcgatctcatggtgatg
gggttccctattcgcttaccccttggcggagaaacaatgtgtgcctgtcatgggttgttg
agaaagggaggatatctctgtccgagatgtgggagtaagctttgtgatgtaccgacggat
tgtgaggtatgtgggttgatggtggttagcagtccccatctcgctcgaagcttctggttc
ttattccctgtggccaattatggtccattatctatcgaggatgtggtggaatcgagcgag
acatgctttgggtgtgatagcgagttttccgatgctaccgcgatcaatgctggcgtagcc
caagttgaagatggtgtgagccccacgggacggtatagatgcgccaagtgcaagcatgat
ttctgtgccgactgtgatctctacatccacgacacactacacacctgccctgggtgttcg
taa
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