Cryptococcus neoformans var. neoformans JEC21: CNB01380
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Entry
CNB01380 CDS
T00243
Name
(RefSeq) damaged DNA binding protein, putative
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CNB01380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cne03400
]
CNB01380
DNA repair and recombination proteins [BR:
cne03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
CNB01380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
DUF722
Motif
Other DBs
NCBI-GeneID:
3255939
NCBI-ProteinID:
XP_024512126
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All DBs
Position
2:complement(join(412155..412231,412273..412337,412385..412729,412784..413065,413113..413342,413395..413512,413567..413694,413755..414453,414504..414561,414616..414694,414749..414838,414896..415048,415101..415152,415202..415351))
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AA seq
841 aa
AA seq
DB search
MSDRAGFTLSIFAIDVSPPMGELKADPSGSGKVSKLSLAKEYVARQIQSKILSGRKTEVI
GLVSFGGRTNNQAYNSGLEEGMENELYRAVSSDVACQTAKAKALEVLMNLEEGKHAGNPV
SALMVGLDMIQSWKVTKQWSVDLTLITDGETAFEQDEYEEAIDRLEQLQVILRVLGIDFQ
PISQAVDKSKSRNKRLSEKFWRVFTSTLQGRLEQSSNPRLYPALKVFDDSLEAARSPQVA
TVNSTLSGIDLHIGSLDVGRDEAIVIPVRYSKATAKASAPTFSKAWKPAMDLQMPMRSTA
DGISLSNPLISGLLNQSQSQGKNPPSTEEMAGMISAEVKQHHSYVIKKPEINASGNRIST
QASGLEPSEQVDENENEEEDDEEYVDKEDVVKAWKFGSTWVPVPEKTFTTLDTSKGIEVL
GFFPVENIRRYHLIGEARYVWPDLLSPKAQIQFSALVEAMHDRKMCAVTRWVLKDRGEPT
MGACVPVIENKGPDEEGKPSILPYMYWLKLPFAEDERTFRFPSLTTIKTNTGKILTEHPL
LPTKEQSLLMDELVLGMDLDEYAREGKRKTQENEEQDVDEQMDEQGQDVTWFKPWEAVNP
VIHRIKEAVFHASLTPDLDKDPLGPPHPELTKYFETPSELAEKVKDVTERLKEVLDIKKV
PEKRKRRKAQKEELGEDEGFINEDELFAEPTETKPTTKTELQTQTSSQPTTAAPIQDQSK
PKPGRLISNGSPIDDFNRVIQVGDVFRKAIQDMNEVVKENVESSFSRQNFAGAIDCLKLM
RSTALGYEEVETYNNCIDSLEQTVKARGFKHPDFWDYFKSAGKSVSKISEEEAEAAMEDF
E
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagagccggcttcaccctctcaatctttgccatcgatgtctcgcctcctatg
ggcgagctcaaagccgatccttctgggtcaggcaaggtgtccaagttgagcctcgccaaa
gagtacgtagcaagacaaatacagtcaaaaatactaagtggaaggaaaacggaggtcatc
ggtcttgtcagcttcggaggtcgcaccaacaaccaagcgtataattctggtcttgaggaa
ggtatggaaaatgagctatatagagcagtgtcatcggacgtggcttgtcaaaccgccaag
gccaaagctttggaggtgttgatgaatcttgaagaaggaaaacatgctggtaatcctgtg
tctgccctcatggtgggtttagatatgatacaatcctggaaggtcacaaagcaatggtcg
gttgacttgacactgatcacggacggagaaactgcgtttgaacaggatgagtatgaagaa
gctattgacaggctagagcaactgcaggtcatcctccgggtacttggcattgattttcaa
cccatttcacaagcagtagataaaagtaaatctcgaaataaacggctctcagagaaattc
tggcgtgtcttcacctctacgctgcaggggcgtctggagcaatcatccaatccgcgactc
taccctgccttgaaagtttttgacgactccctggaagcagctcgtagcccacaggttgcc
actgtcaatagcacccttagtggcatagatctacacatcggctccttggatgttggccgg
gatgaagccatcgttatccccgttagatacagcaaggctaccgccaaagcttcagcacct
acattctcaaaagcgtggaagccagccatggatttgcaaatgcccatgcgctctacggcc
gatggtatctcactgtcgaatccattaatctctgggctactcaaccagtcgcagtcgcag
ggcaaaaatccacccagtaccgaggaaatggcggggatgatctcggctgaagtcaagcag
catcactcatatgtgatcaaaaagccggagattaatgcctcaggcaatcgaattagcact
caagcaagtggtcttgaaccttctgaacaggtagatgaaaatgaaaatgaggaagaagat
gacgaagaatacgtcgataaagaggatgtggtcaaggcatggaagtttggatctacatgg
gttcctgtgcccgagaaaaccttcacgacgctcgacactagtaagggcattgaagtactt
gggtttttccctgtggaaaacatacgaagatatcatctcatcggtgaagcacgatatgtc
tggcctgatctgctctctccaaaagctcaaattcagttctcagcgttggttgaagcaatg
cacgatcggaagatgtgtgcagtgacgagatgggtcctgaaggacaggggtgagccaacc
atgggtgcctgcgtaccagtcattgaaaacaaaggacccgatgaagaaggaaagcccagc
atattgccgtacatgtactggctgaaactgccttttgccgaagacgaacgcaccttccgt
ttcccatcactgaccaccattaagaccaacactggcaagattttaacggaacatcccctc
ttgcctactaaggaacaaagtctgctgatggatgaattggttctgggtatggatctggat
gaatatgcaagagaggggaagagaaagacccaggaaaatgaggaacaggatgtggacgaa
cagatggacgaacaaggccaagatgttacttggtttaaaccatgggaagcggtgaaccct
gtcattcatcgaatcaaagaggctgttttccacgcgtccctcacccccgatcttgacaaa
gatccgcttggaccgccccatcctgaacttaccaagtactttgaaacgccgtcagaactt
gctgaaaaggtgaaagacgtgacagagcgattgaaagaggttctagatatcaagaaagtc
ccggagaaaaggaagaggcggaaggcgcagaaggaagaactaggtgaagacgaaggattt
atcaatgaagatgaactcttcgctgaaccgaccgagacaaaacccactaccaagaccgaa
cttcagactcaaacgtcgtcccagcccacaaccgcagctcctattcaagaccaaagcaag
ccaaagccgggcagacttatcagtaatggtagtccgattgacgatttcaaccgcgtgatt
caggtcggagatgtttttcgcaaggccattcaggatatgaatgaagtggtaaaggaaaat
gtggagagcagtttctcaaggcaaaactttgctggagcaatcgattgcttaaagttgatg
aggtctaccgcgcttgggtacgaggaagtggaaacgtataataactgcattgattctctt
gagcaaactgttaaggctagaggtttcaagcatcctgatttctgggactattttaagtca
gccggtaaatctgttagtaagatttcggaagaagaggccgaggcagccatggaggatttt
gaataa
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