Cryptococcus neoformans var. neoformans JEC21: CNB01970
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Entry
CNB01970 CDS
T00243
Name
(RefSeq) pre-mRNA splicing factor, putative
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNB01970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cne03041
]
CNB01970
Enzymes [BR:
cne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CNB01970
Spliceosome [BR:
cne03041
]
Complex A
U2 snRNP components
U2 related factors
CNB01970
Complex B
CNB01970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
TsaD
Motif
Other DBs
NCBI-GeneID:
3255760
NCBI-ProteinID:
XP_569125
UniProt:
P0CQ98
LinkDB
All DBs
Position
2:join(573200..573728,573784..574267,574321..574548,574601..574877,574930..575598,575649..575835,575885..576729)
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AA seq
1072 aa
AA seq
DB search
MPRSPYRSSNRSYRSPSPSRYDRSHPSSSSRRQDDRKASRYDDDYSRDRERDRERERDRT
RDYRDRDRDYDRRRDKDRYRDDDRDRRRRDDKDDRRREERDRGSDRKRDSERRSPMSTIR
VDPIVSLASPVPETEEEKKRKAKERLETWKRQRALKEGKSAAATPEPKSTAPPPVTSGLP
PKPTAFSLSRIGLPLKPTNPTPLKRSMAALDDEDTSDRKLQKLDLPDFDPEVQSGDAAQV
GSIGADLAVADGDEDDDTVVKKEEEKEEKMDIDKKAEEDEEEDPLDAFMRDNVQQVVEVN
KADAKRMGLRVAEDGSDDENQGQVVEKDKLAEAEALLQQAAAKSRKKDLPPPDHSKIDYE
PFRKAFYVPPVEVLEMDEEEAELVRLEMDGIKIRGQDAPKPVRNWGAFGLPQGCLDVIKH
QGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAV
VMSPTRELASQIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDL
LTANNGRVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRPSAQKVLFSATFPKTMES
LARRILVKPLEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLEILGEMGEEHKDEDDFRTL
IFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVAARGL
DVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQERFSVDIVRALEASKA
FIPDDLKKMSDSFLGKIKSGKARAAGSGYSGKGLERIERRREEKDRAEKTTYGDTSEALS
LSSREGAVIPYKAKTNEFKPPETSHKGEADYTFTEIKVDIVNGPAPDRVSSQPVFNPKNA
VASLPAQTLAALEKAKKEGRGVDAANLANVVAKLTQSIELTKAEKLGLAAATSAPRLAPG
ARTKDPDATDWHAIFPINDYPQKARWKATNKEQMTLLQEVSGASITMRGRFYPPGEEPAL
GGEPKLSLLIESNDEMRVRAAVEEIRRVLVEGSVQALNAVDRAGASGGRYAV
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgcctagatcaccgtatagatcatcgaacaggagctatcgcagcccctcgccttcccgg
tacgaccgatctcacccgagctcctcttctagacgtcaagacgaccgaaaagcctcgagg
tacgacgacgattattcgagggaccgagagagagatagggaaagggaaagggataggact
agagactacagggatagagatagggattatgataggaggcgagataaggacagatatcgt
gatgatgaccgagacagacggaggagagacgataaagatgacaggcggcgagaagagagg
gatcgaggttctgaccgcaagagagattctgagaggagatctcctatgtcgaccattcgt
gtggatcctattgtatcattagcttcacctgttccggaaactgaagaggagaagaaacga
aaggcaaaagagagactggaaacttggaagcgccagcgtgccttgaaggagggcaagtct
gcagctgcaacacctgagccgaagagcactgcacctccccccgttacctctggcctgccg
cctaaacctaccgccttttccctctctcgtatcggtctcccactcaaacccacaaatcca
acgccactcaaacgtagcatggctgctcttgacgacgaagatacatctgaccgcaaactt
cagaagctcgatctacctgattttgatcctgaagtccagtcaggagacgcggctcaggtg
ggctccattggtgcagacttggcagtggcggatggagatgaagatgatgatacggtggtg
aaaaaggaggaggagaaggaggagaagatggatatagacaagaaagcggaagaagatgag
gaagaggacccgttggatgcgttcatgagagacaacgtgcagcaggtcgtagaggtgaac
aaggcggacgccaagcgaatggggttgcgggttgctgaggatggcagcgacgacgaaaat
cagggacaagtcgtggagaaggataagcttgccgaagcggaggcgttgttgcaacaagct
gcggctaaatcacgcaagaaagatcttcctcctcctgaccattccaagatcgactatgaa
cctttccgcaaggctttctacgtaccgcctgttgaagtattggagatggatgaggaagag
gctgagttagtgcgtttggaaatggacggcatcaaaattcgaggacaggatgctccaaag
ccagttaggaactggggcgcctttggcctgcctcaggggtgcctcgatgtaatcaagcac
caaggttgggaaacacccacgtccattcaagctcaggctatcccagctataatgtccggc
cgagacgtcatcggtattgctaaaaccggttccggtaagactgttgctttcctcttgcca
atgctccgtcacgttcgcgaccaaaggcctgtgtccggtagtgaagggcctattgcggtt
gtcatgtcacctaccagggagttggcctctcagatttacaaagaatgccagccctttctt
aaggtgctcaacattagggcttcctgctgcgtcggcggttcgtcaattagtgaggatatc
gctgccatgaagaaaggtgccgaagtggttatttgcactcctggccgaatgattgacctt
ctcaccgccaataacggccgagtcacaaacgtccgacgcaccacttacatcgttatggat
gaggccgaccgaatgtttgatatgggctttgaacctcaagtcatgaaaattatcaataat
gttagaccgagcgcccagaaggttctattctcagcaacattccccaagacaatggaatca
cttgcgaggagaattttggtgaagcctttggagatcacagtcggaggcagaagtgttgtt
gcacccgaaattgaccagcgtgtcgaagtgcgtgatggtgatacgaagttcacacgtttg
cttgaaattcttggtgagatgggcgaggagcacaaggacgaagatgatttccgcaccctt
atctttgtagaccgtcaagaaagtgcggatgatctatttagagaactgctacagagaggt
tatgtctgtgcttcactgcacggcggtaaagagcaggtcgatcgagatgaagcgatcaaa
aacttcaagaatggtgatgtgcctataattgtggcgacttcagtagcggcaaggggtttg
gatgtaaaagagttgaagcttgtcattaattatgacgcacctaaccatatggaagactat
gttcatcgtgctggccgaacaggtcgtgcggggaacaaaggcacttgcataacatttatc
acgccggagcaggaaaggttctccgtcgacatcgtacgagctttggaagcgagtaaggca
ttcatccccgatgacctgaaaaagatgtcggattcattcctcggtaagatcaagtctggc
aaagcccgagcagctggtagtggatacagtggtaaaggtctcgagcgaatcgaacgccgt
cgggaggagaaagaccgagctgaaaagaccacctacggcgatacgtctgaagccctgtca
ctctcctcgcgtgagggtgctgtcatcccctacaaagccaagacgaatgagttcaagcct
ccagagacctctcacaagggtgaagcagactatacattcacagaaatcaaggttgatatc
gtcaatggccctgcgccggaccgcgtgtcctctcaacctgtatttaacccgaagaacgcc
gtggcctctttgccagcacaaacactggcggcactggagaaggcaaagaaggagggccga
ggcgtagatgcggcgaatctggcaaatgtggtggccaaacttacccaatctatcgaactc
accaaagccgagaaacttggtctggcggcagccacctctgcacctcgtcttgctcctggt
gcgagaacaaaagatcccgacgctaccgactggcatgctattttccccatcaatgattac
cctcaaaaggctcgttggaaggctaccaataaggagcaaatgactttgctgcaagaagtt
tcaggagcaagtatcacaatgcgaggcagattttacccgcctggggaggaacctgcgttg
ggtggtgaacccaagttgagtctgttgatagagagcaacgacgaaatgagagtgagggct
gctgtagaagaaattcgaagggtgctggtcgaaggatcagtacaagcacttaatgcggtc
gatagagcgggtgcgagtggcgggaggtacgctgtgtag
DBGET
integrated database retrieval system
