Cryptococcus neoformans var. neoformans JEC21: CNB02890
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Entry
CNB02890 CDS
T00243
Name
(RefSeq) purine-specific oxidized base lesion DNA N-glycosylase, putative
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CNB02890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cne03400
]
CNB02890
Enzymes [BR:
cne01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CNB02890
DNA repair and recombination proteins [BR:
cne03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CNB02890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HHH
HhH-GPD
Motif
Other DBs
NCBI-GeneID:
3256018
NCBI-ProteinID:
XP_569014
UniProt:
Q5KM54
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All DBs
Position
2:complement(join(852394..852804,852861..853245,853284..853720))
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AA seq
410 aa
AA seq
DB search
MSRPPFPAGWASVRMDPRNLSLANTLPVGQAFLWHRLPLPASDPPFEEYSRAVHSPPRVV
CLRQSPTHIYYTAVYPSGSAPEPERSNLSTRQWLEDYFQLVRYPDLEALYLDWRRRDPEL
FGKVHVNDRATGIRVLRQDPWECLLAFITSTNNHIPRITSLLHKFSQSFTKPVLTLKHPS
NGILIPYHLFPAPHQIPTRLEKPLRDMGFGYRAPFIEASLQLLRNKFGDKEGDIEAGLVA
WRNEDVDIVRENLIALKGVGRKVADCVMLMCLDKPSLIPIDTHIAHIAARHPAFPSRLKN
KAMSKQVYEETQEFLLGRWGPMGGWCQAVLFAADLPQSRGNIKVKTKVESIVKTVVKTET
SLDNVGNVRRKRGESEEEKLPVLKRTRSATKQAQQVLVGVDVKYDENTDR
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggccgccgttccccgccgggtgggcgtccgtgcgcatggacccccgcaacctc
tcgctggcaaacacgctgcccgtcggccaggccttcctctggcacaggctccccctcccc
gccagcgatccccccttcgaagagtattccagggcagtacactccccccctcgtgtcgtg
tgtctccgccagtcgcccacgcacatatactacactgccgtatatccctccgggtcagcc
ccagagccagagcgcagcaatctctccaccaggcagtggcttgaggactacttccagctg
gtcagatatccagacttggaagccttgtatctcgactggcggcgcagagacccagagctg
tttggtaaagtacacgtcaatgacagagccactgggatccgggtcctcaggcaagatcca
tgggaatgtctcttagccttcatcacatccaccaacaaccacataccacgtataacttcg
ctactgcataaattctcgcaatctttcacaaagccggtgcttactctcaaacatccctcg
aatggtatcttgattccataccacctgttccccgcccctcatcagataccaacaagactg
gaaaaacccctgcgtgacatgggttttgggtaccgcgctccgtttatcgaagcctctttg
cagctgctccgcaacaaattcggggataaagagggagatatagaagctgggctcgtagcg
tggagaaacgaagatgtggacattgtacgtgagaaccttattgcattgaaaggcgtcgga
agaaaagtcgcagactgtgtaatgctcatgtgtctcgataaaccctctctgattcccatc
gatacccatattgcacatattgccgcaagacatcctgcctttccatcccgtctgaagaac
aaggcaatgtcgaaacaggtctatgaggagacgcaggaatttttgcttggtcgttggggc
ccaatgggaggatggtgtcaggccgtcttatttgcggctgatctccctcaatcccgaggc
aatataaaagtgaagacaaaagttgaatctattgtgaaaactgttgtaaagaccgagaca
agcctggataatgttggtaacgtcaggcggaaacgaggggagagtgaagaagaaaaactg
cccgtcttgaagcgtactcgcagtgcgacaaagcaagcgcaacaagtgctagtgggcgtg
gatgtaaagtatgatgaaaatacggaccggtag
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