Cryptococcus neoformans var. grubii H99: CNAG_02303
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Entry
CNAG_02303 CDS
T08175
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cng
Cryptococcus neoformans var. grubii H99
Pathway
cng03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cng00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNAG_02303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cng03041
]
CNAG_02303
Enzymes [BR:
cng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CNAG_02303
Spliceosome [BR:
cng03041
]
Complex C
Other components
Step II factors
CNAG_02303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_30
SLFN-g3_helicase
ATPase
AAA_16
Motif
Other DBs
NCBI-GeneID:
23885937
NCBI-ProteinID:
XP_012049767
UniProt:
J9VSE6
LinkDB
All DBs
Position
6:654615..659868
Genome browser
AA seq
1302 aa
AA seq
DB search
MSARSPRGPTTEDEFSHQIAIEMSRIMNQVNPNDLLGKRIVDIAKGNRTGDAFLRAVSTF
GQFPRDPMLSLHTRILAHLSVLQGQNQSSARRGSDHSPPRMLGGRPVGENVEGMDHDDTD
TLAPEPMRKGGLRRAGNVPTFKAPATARPSLLGLDKLAAEKRAAAAATADRNGPPSKKAR
KDEGDEDDEQSGGVFKVPAIPVRRDNVRVRPEETPSRGSGLSEEARARLEARRRERNQPS
TGISASTADREHSREGLEDFQRRANRDRWNERGGERESGQGEYGRDGRGGGNDRGRKQDG
RDGKPWNAAPTPRTSRADRDFDGGSARIPNRGWDETPRGSRGPGGWGKGERTSRGWDQTP
RSARESPEGGGLDLNAKEWEEEQVKLDRDWYSYDDEGAVAADDDHNPFSQWENLERAKEE
ELQAKAVKRQTARQAQFNADNDLWETNRMQTSGVLQRGGVDDDFDDDSDSKVHVLVHDLK
PPFLDGTVAYTKQLDPINPVKDGTSDMAIFSKKGSALVRERRERQEREKAAAKAASMAGT
TLGNLMGVKDEPDLGQEGQKDGVTENYKADSQFSSHLKKSEGVSNFAKSRTLKEQREYLP
AFAVREELMGMIRDHQVLVVIGETGSGKTTQLGQFLYEDGYCANGMIGCTQPRRVAAMSV
AKRVSEEMECTLGETVGYAIRFEDCTSKDTKIKFMTDGVLLRESLNEGDLDRYSVIILDE
AHERSLSTDILMGLLRKILTRRRDLKLIVTSATMNAEKFSQFFGNAATYTIPGRTFPVEI
FHSKSPCEDYVDSAIKQVLQIHLSSSQGDILVFMTGQEDIECCCQVIEERLSQLDDPPPL
AVLPIYSQMPADLQAKIFQPTPDGRRKVVVATNIAETSLTVDGILYVVDSGYSKLKVYNP
KVGMDALQITPISQANCGQRAGRAGRTGPGFCYRLYTETAYLNELFASNIPEIQRTNLAN
TVLLLKSLGVKNLLEFDFMDPPPQENILNSMYQLWVLGALDNVGNLTPIGRKMSDFPMEP
SLAKMLIVSVDYQCSSEMLTIVSMLSVPSVFYRPPQRAEESDAAREKFFVPESDHLTLLH
VYTQWKSNGYSDSWCMKHFLHPKLMRKAREVRGQLEDIMKQQKMDLLSVGTDWDIVRKCI
TAGYFHQAARVKGIGEYMNIRTGLPCVLHPTSALYGLGYMPDYVVYHELVLTSKQYMMCV
TSVDPYWLADLGSVFFSIREKNFDALARARANRDFSKKTEMEAEMARQREEMERAKAEKI
KKEAVAKTPRIGGVGVAYTPKSAGIGAGARSSATPRRRAGGI
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccaggtcaccaaggggtccaacaaccgaagatgagttttcacaccaaattgct
atcgagatgtcccgaatcatgaaccaagtcaacccgaatgacctccttggtaaacgaata
gtggatatcgcaaaaggcaatcgtaccggcgatgcattccttagagctgtttcgacattc
ggccagtttcctagagatcctatgctatctctccacacccgtattctcgcccacctttca
gttctccaagggcaaaaccagtcaagcgctcgtagaggatctgaccattccccacctagg
atgcttggtggtcgacccgttggagaaaatgtggagggcatggatcatgatgataccgat
acattagcacctgagcctatgaggaaaggtggcttaagaagagctggtaatgtaccgact
tttaaagctcccgctacagctagaccatcattgctgggattggacaagttagccgctgag
aaacgtgcagcagcggccgccacagcagacagaaatggtccgccgtctaaaaaggctcga
aaagatgaaggagatgaagatgacgaacaatcaggcggtgtcttcaaggtgcccgccatt
ccggttcgaagggataatgtccgggtgcggccggaggaaacacccagccgaggatctggc
ctgtcagaagaggctcgcgctcggctcgaagctcgccgcagagaacgcaaccaacctagc
acgggcattagtgcgagcactgccgatcgcgaacattcaagagagggccttgaggatttt
cagaggagagcaaacagggacagatggaatgaacgaggtggggagagagagtcaggacag
ggggaatacggtagagatggacgaggaggcgggaatgacaggggcagaaaacaagatggt
cgagacggcaaaccgtggaatgcagcaccgacgcctcgcacgtctcgtgcagacagagac
tttgatggtggtagtgcccgtatccccaatcggggctgggacgaaactccgcgcggttcg
cgcggtcctggaggatggggcaaaggagaacgcacatccaggggttgggaccagactccg
agatcggctagagaatcaccggaagggggcgggttggatctcaacgctaaagagtgggaa
gaagagcaagtcaagctggatcgagactggtatagttacgatgatgaaggggcagtggct
gcggatgacgatcataatccattctcacaatgggaaaatttagaaagagcaaaagaggaa
gaactgcaagctaaggctgtcaaacgtcagactgcccgtcaagctcaatttaatgcggat
aatgacctttgggaaactaaccgaatgcaaacatcgggtgttctccaaagaggaggcgtt
gacgacgacttcgacgatgactctgattccaaagttcatgttttagtgcatgacctcaaa
cctccctttttggatggtactgtggcatatacaaagcaacttgaccccattaatcctgtt
aaggatggcacaagtgacatggctatcttctccaagaaaggaagcgctttggtgagggag
agaagggaaaggcaggagagggaaaaggctgcggcaaaggcagcgtcaatggcaggtacc
acccttggtaacctcatgggtgtcaaggacgaaccagatctcggtcaagagggtcagaaa
gatggcgtgactgagaattacaaggctgattcacaattttcgagccatcttaagaaatcg
gaaggtgtctcgaactttgcaaagagtcgtactttaaaagagcagcgagaatatttgccg
gcctttgcggtacgagaagagttgatgggaatgatacgagatcatcaagtgcttgttgtc
attggagagaccgggtcaggcaaaacaactcagctgggacagtttttgtatgaggacggg
tattgtgcgaacggaatgattgggtgcactcaaccacgtcgtgtagctgccatgtctgtg
gctaagcgtgtcagcgaagaaatggagtgtaccctaggtgaaaccgttggctacgctatc
cgtttcgaagactgtacatccaaagatacaaaaattaagttcatgacagatggtgtcttg
cttcgagagtcattgaatgaaggcgatttggatcgatatagtgtcatcatccttgatgaa
gcacacgagcgatcactgagtacagatatcctgatgggtcttttgcgaaaaatccttaca
cgccgacgtgatctcaagctcatcgttacctcagctaccatgaatgctgaaaagttctct
caattttttggtaacgctgccacttatactatacctggtcgtaccttccccgttgagatc
tttcattccaagtcaccttgcgaagattacgttgatagtgccattaagcaagtcctccaa
atccacctctcaagttcgcagggagatattttggttttcatgacaggtcaagaggatatc
gaatgttgctgtcaagtcattgaagaacgactgtctcagcttgatgaccctccgcctttg
gctgtgctaccaatctactctcaaatgccggcggacctacaagcgaagatcttccagcca
accccggatggtcgacgtaaggtcgttgttgctaccaacatcgcggaaacttctctcaca
gttgacggtatcctatatgttgttgactccggatactcgaagctcaaggtatacaacccg
aaggtcggaatggatgctttgcaaatcacgcctatcagtcaagccaactgtggccaacgt
gctggtcgtgctggtcgtacaggtcctggcttttgttaccgactgtatactgagacggca
tatctcaacgagctgtttgctagcaacatccctgaaatccagaggaccaacttggcgaac
accgtactacttctcaagtcattgggtgtcaagaatttactggagtttgattttatggat
cctcctcctcaggaaaacatcctcaactcgatgtaccagctttgggtacttggcgcttta
gataacgtgggcaatttgacccctatcggtcgcaaaatgtccgatttcccaatggaacca
tccctcgccaagatgctcattgtctccgttgactatcaatgttcttctgagatgctcacc
atcgtgtccatgttatctgtgccatcagtgttttacagacctcctcaaagagcagaagag
agtgacgctgccagggaaaagttctttgtgcctgaaagcgaccatctgacactgttacac
gtttacacccagtggaagagcaatgggtacagtgattcttggtgcatgaaacatttcttg
cacccgaagctcatgaggaaggcccgagaggtgcgaggacagttggaggacattatgaaa
caacaaaaaatggaccttttgtctgtaggaacggattgggatatcgtcagaaaatgtatc
actgctggttacttccatcaggcggcgagagtcaaaggcattggggagtatatgaacatt
cgaacagggttgccttgtgttcttcaccccacttctgcattgtatggtcttggttatatg
cctgactatgttgtgtatcatgagcttgtattaacatccaaacaatacatgatgtgtgta
acctcggttgatccgtattggcttgccgatctcggtagtgtcttcttttcaattagagag
aaaaacttcgatgctttggcgcgcgcacgagcaaacagagacttcagcaagaaaacagag
atggaagctgagatggccagacagcgtgaggagatggaacgagcgaaagctgagaagatc
aagaaggaagcagtggcaaagacccccagaattggcggcgttggagtggcatatacgccg
aaaagtgcaggtattggtgcgggcgcgaggtcatctgcgacaccgagaagacgagcagga
ggcatttaa
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