KEGG   Cryptococcus neoformans var. grubii H99: CNAG_04278
Entry
CNAG_04278        CDS       T08175                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cng  Cryptococcus neoformans var. grubii H99
Pathway
cng03030  DNA replication
cng03410  Base excision repair
cng03420  Nucleotide excision repair
cng03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cng00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CNAG_04278
   03410 Base excision repair
    CNAG_04278
   03420 Nucleotide excision repair
    CNAG_04278
   03430 Mismatch repair
    CNAG_04278
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cng03032]
    CNAG_04278
   03400 DNA repair and recombination proteins [BR:cng03400]
    CNAG_04278
Enzymes [BR:cng01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CNAG_04278
    6.5.1.6  DNA ligase (ATP or NAD+)
     CNAG_04278
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CNAG_04278
DNA replication proteins [BR:cng03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    CNAG_04278
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     CNAG_04278
DNA repair and recombination proteins [BR:cng03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CNAG_04278
   NER (nucleotide excision repair)
    Other NER factors
     CNAG_04278
   MMR (mismatch excision repair)
    Other MMR factors
     CNAG_04278
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 23887713
NCBI-ProteinID: XP_012051472
UniProt: J9VRY1
LinkDB
Position
9:complement(462404..465703)
AA seq 803 aa
MSDIEPSVKTNIGKKRMVILSDDEDEGPGTSVIKEQVSSPKHSPLSDEEREPPRKVAKTS
SKVAPIFAPKEKKEKPSPKTSSTSSKAPTKEIEVNRKGEKPLASIFTKATLKPGPKDDGE
VSDEVKQKGKIEEEEDAIYDEIEDKQEGEAAVKLASIFTKNQKSVPVADKGWKDGEAVPY
PALVSTFEKIEATTKRLEILEILTQFLLVVAKRDTATDAKGSMLLKVVYLCINRLCPDYI
GIELGIGESLLVKAIAESTGRAMPKIKEDLKREGDLGKVAMNSRNTQSTMFKPKPLTVPY
VFQCLTDIAKASGNASQTKKVGIIKKLLAACQGTEAKFIIRSLEGKLRIGLADKTVVVAL
AHAIVLKTIGDKKPQPEKLAAMLEQGAETVKAVYSELPSYDLVIPALLQGGVEGLREHCK
LTPGVPLKPMLAKPTKAITEVLDRFEGKEFTCEYKYDGERAQVHLLEDGTISVFSRNSEN
MSAKYPDLVDQIPRAMKPTAKTFVIDAEAVAYDLETKKILPFQDLSRRKRKDVKAEDITV
RVHIFAFDLLYLNGESLLAKELKERRQLLQEHFQPVESEFAFAKSSDGSTTEEIQALLEE
SVKDGCEGLMVKMLTSESSTYEPSRRSMNWLKLKKDYLSGVGDSLDLVVIGAYHGKGKRT
AVYGAFLLACYDPDSEHYQTICKIGTGFSEEILAQFYEILKPLELEVVRGDIEVGGAKPD
VWFEPRVVWEVLTADLSLSPIYAAAHGVIDSRGISLRFPRFIRIRDDKSADEATTAEQVS
EFYQRQVSAGGKKGAGADVDDFW
NT seq 2412 nt   +upstreamnt  +downstreamnt
atgagcgacatagaaccttcagttaagactaatatcgggaagaagcggatggttattctt
tcggatgacgaggacgaaggacccggtacatctgtgattaaggagcaggtctcgtctccc
aaacattctcctttatctgatgaagagagagagcctccccgaaaagttgcaaaaacgtca
tccaaagtcgcgcctatcttcgcccccaaagagaagaaagaaaagccatctcccaagact
tcgtcaacttcatctaaagcacccaccaaggagatagaagtaaatcgcaagggcgaaaaa
ccactggcatcaatattcacaaaagctacactgaagcctgggcctaaggatgacggcgag
gtgtcggacgaggtgaagcaaaaggggaaaattgaagaagaggaggatgcaatatatgat
gagattgaggataagcaagaaggagaggccgctgtaaaactggcttcaatctttaccaag
aaccaaaagtctgtccctgtggctgacaagggctggaaagatggcgaagcggttccatat
cccgctcttgtgtcaacgttcgaaaaaattgaggctacgactaagcggttagaaattctc
gaaatcttaacccagtttttgctcgttgttgccaagagagatacagccacagacgccaaa
gggtctatgcttctcaaagtggtctatctttgcatcaacaggctatgtcccgactatatt
ggtatcgagcttggtattggagaatcattattagtcaaagccatcgcagagagcacaggt
cgggctatgcccaagatcaaagaagatctcaagagggaaggagacctaggaaaagttgcc
atgaactctagaaacactcaatcaaccatgttcaagcctaagccgttgacagtaccatac
gttttccaatgtctcactgacattgcaaaggctagcggaaacgcgtctcaaacgaagaaa
gtaggcatcattaaaaaacttcttgctgcttgccaaggcaccgaggccaaatttatcatc
cgatccctcgaaggaaaattacggatcggtctcgccgacaaaacagttgtcgtcgccttg
gctcacgctatcgtcctaaaaacgattggtgacaaaaaaccccaacctgaaaaacttgct
gccatgctggaacagggcgctgagactgttaaagctgtctatagtgagcttccatcatac
gacctagttatccctgctcttctccaaggtggcgtagaaggcttgagagaacactgtaaa
cttactccaggcgttcctctcaaacctatgcttgccaagccgacgaaagccatcacagag
gtcctcgaccgtttcgaaggcaaggaattcacttgcgagtacaagtacgatggagagcgt
gctcaggtccacctattggaagatggtactatttctgtgtttagtagaaattcggaaaac
atgagtgccaagtatcccgatctggtggatcaaataccgagggctatgaaacctactgcc
aagacgtttgtcattgatgccgaagccgttgcttatgacttggaaaccaagaagattctt
cccttccaagacctgagtaggcgaaagcgaaaggatgtcaaggccgaggacatcacggtg
cgagttcatatctttgcgttcgatttgctctatctcaatggagagagtctcctcgctaaa
gagctcaaagaaagacgacagctcctacaagagcatttccaacctgtagaatcggagttt
gcctttgccaagtcatcagatggaagtacgacagaggagattcaggcgttgctcgaagaa
agtgtgaaggatgggtgtgagggtctgatggtgaaaatgctcactagcgagtcatcaacg
tatgagcccagtagaagaagtatgaattggctcaagctcaagaaagactatctttcaggt
gttggggactccctcgatcttgttgtcattggagcatatcatggcaagggcaaacgtaca
gcagtctatggtgctttcctcctcgcgtgctatgaccccgattcggagcattaccagact
atctgcaagattggtaccggattctccgaggaaatcctcgcacaattctatgaaatactt
aaacctttagaactggaagtggtgagaggagatatagaggttggaggagccaaaccggat
gtatggtttgagcccagagtggtctgggaggtcttaacagccgatttgagtttaagtccg
atttacgcagcggcgcatggtgtaatcgattctcgaggaatctcgctccgtttcccacga
tttatcaggattagagacgacaagtctgctgacgaagccacaacggctgagcaggtcagc
gaattctatcaacgtcaggtttcggcaggtggcaagaaaggggcgggggcggatgtggat
gacttctggtaa

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