Calditerrivibrio nitroreducens: Calni_1739
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Entry
Calni_1739 CDS
T01364
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cni
Calditerrivibrio nitroreducens
Pathway
cni03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Calni_1739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cni03400
]
Calni_1739
Enzymes [BR:
cni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Calni_1739
DNA repair and recombination proteins [BR:
cni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Calni_1739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF1474
Motif
Other DBs
NCBI-ProteinID:
ADR19645
UniProt:
E4TG58
LinkDB
All DBs
Position
complement(1795410..1798706)
Genome browser
AA seq
1098 aa
AA seq
DB search
MIIKEYSGLWGASRSYFFSKIVNKDKRYLVICDDFLYERLLNELSFFLTRNKLSPFPSYM
HEPFEKSRILPSIVGERITTLLNLLDGKPAVVFTNIYAVAKKLPPKETIISSICHIKKNG
SFDRDELIYYLDYLGFIHVEIVTDPGEYSFRGSIVDFYPVNNDLPLRVEFFDDEIENIFE
YNLETQKRVNELREFLIIPATEGIYDLDEFKKAVKNTPIEEKAEIYGKFAGHHWYAPLIY
QNMYQLFDFLNDFDIIYIGEGIQKEIDRFYSRLSDCAAEYEIPEGLFRANFIMKNDLYEY
LSDREVVVLSEVISEGSIKNPEYKSTQFLIPPTKNSYQALSNMVEIFKKNRENGIATVFS
TESEKFQNVTKDFFRDYEIDVYYPINHSEISKERLNIYPYAITGGFFNEKDKLVLLRDEE
IFGFVRRGRKKEKKEVFRTNISDLEPGDYVVHIDYGIGIFRGLEHKTIGGIEGDYIAIEY
EGGELLFVSLENISHIQKYIGKGDVAVKLNSLQNTRWKKLKEQAQKSAKKVAIDLLKLYA
ERKAKLGFSFKDDGTFMKIIEDSFEYDETEDQINAIRDVIADMESEKAMDRLICGDVGFG
KTEVAIRAACKCCASGKQVALLAPTTILVKQHFETFKRRFSNLPFKIEYVSRFKSKKEIN
ETLRKVANGEIDIIIGTHRLLSNDVSFHDLGLLIIDEEQRFGVAHKEKIKNLKSNIDVLA
MSATPIPRTLQFSLAGIRDISIIETPPEERLPVLTNIINNEEDVKKAIIHELKRGGQVYY
LYNDLSKIEEKAYSIKSMLPEAEVAIAHGQMDPEKVEKTLDAFYDGKIDVLVCSTIIENG
IDIPNVNTIIIDGADKFGLSQLYQLKGRVGRSRVRGYCYLYIRNFNVLSTIAKKRLKIIQ
QMSELGSGFKIASYDLQLRGAGELLGAEQSGHISSIGYELYIQMINDAVKELRGNSENII
ETEIQSTIPYFIPADYILEPSERMRWYNRLTNIDKQLFNQYLEELTFNYGDPPPPVLNLL
KTIYLKSIASRIGIKKITIMNKQIKFTLEQNNKLDLQKMLNIFSELKLKGNFAQDNSLLI
YSESPLDNGIVVVEYLCE
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
gtgataattaaagaatactctggcctctggggggcttcacgatcctactttttttcaaag
atcgttaacaaagataaacgatatctagtgatatgtgatgattttctgtatgaaagatta
ttaaatgaattgagcttttttttaaccaggaataagctttccccatttccatcatacatg
catgaaccttttgaaaagtcgagaatattaccatcaattgttggtgaaagaattacaact
ttacttaatcttctggatggtaaaccagccgtagtatttacaaacatatatgccgttgcc
aaaaaacttcctcccaaagagacaataatttcttcaatatgccatattaaaaaaaatggc
agctttgatagggatgagttgatatattacctcgattacttaggtttcatacatgtggag
attgtgactgatcctggggaatattcttttaggggtagcatagtggacttttaccccgtg
aataatgatctcccattgagggtggagtttttcgatgacgagattgaaaatatatttgaa
tacaatcttgagacgcaaaaaagggtcaatgaattaagagagtttctgattattccagca
acagaagggatctacgatctggatgaattcaaaaaggctgtaaaaaatactccgatagag
gaaaaagctgaaatctacgggaaatttgcagggcaccactggtatgccccgctgatctac
caaaatatgtatcagctgttcgattttttaaatgactttgatattatctacataggtgag
gggattcagaaagagattgatcggttttatagcaggttgagtgattgtgccgctgaatat
gagataccagaaggtcttttccgtgctaacttcatcatgaagaatgatctttatgaatat
ctatcagatagagaggtagtagttttatccgaggttatttctgaaggatctattaaaaac
ccagagtataagagtactcaatttttgatccctcccaccaaaaatagctatcaggctctt
tcaaatatggtggagatttttaagaaaaatagagaaaatggtatagctaccgtattttcc
actgagagcgagaaattccagaatgtcacaaaggatttttttagagattacgaaatcgat
gtttactaccctatcaatcattctgaaattagcaaagaaagattgaatatctatccttat
gccataaccgggggattttttaatgaaaaggataagcttgtcctattaagggatgaagag
atattcggttttgttagaagagggagaaaaaaagagaagaaagaggtttttcgcacaaat
ataagtgatctggagcccggcgactatgttgttcacatagactatggtattggcatattc
aggggacttgaacataaaactattggtggcatagaaggtgattatatagccattgagtat
gaagggggagagctactctttgtatctttagaaaatatctcccacatacagaagtatatc
ggtaagggggatgtggctgtaaagctaaactccttacaaaataccagatggaaaaaatta
aaagagcaggcccagaaaagcgcaaaaaaagttgccatcgatctattgaaattatatgcc
gagaggaaggcaaagctcggtttttcatttaaagatgatgggacgtttatgaagattata
gaggatagctttgaatacgatgagacagaagatcagataaatgccatcagggacgttatt
gcagacatggaaagtgaaaaggcaatggacaggctaatatgtggggatgtggggtttggt
aagacggaagttgcaataagggcggcctgtaaatgttgtgcatctggaaaacaggtggca
ttacttgccccaacgacaattctggtaaagcagcattttgaaacgtttaaaaggagattt
tcaaatcttccctttaagatagaatacgtatcaagatttaaatctaagaaagagataaat
gaaaccctccgaaaggttgccaatggggagatagatataataataggtacccacagactg
ctatcaaatgacgtgagttttcacgatttagggcttcttatcatagatgaggagcagcga
tttggggtagcccacaaagagaagatcaaaaatctaaaaagcaatatagatgtgcttgcc
atgagtgccactccaataccaaggacgctccagttttctctggcgggaataagggacata
agcatcatcgaaacacctccggaagaaagattgcctgtacttacaaatattatcaataac
gaagaggatgtaaaaaaggcgattattcatgaactaaaaaggggggggcaggtctactac
ctctataacgacctttcaaaaattgaagaaaaagcatattcaataaaaagtatgcttccg
gaggcggaagtggccatagctcatggacagatggatcctgaaaaagtggagaagacgctt
gatgcgttttatgatggtaagatcgatgtacttgtctgttctacgattatagaaaacggc
attgatataccaaacgtaaataccataattattgatggggctgataaattcggactctca
cagctttaccagttgaagggcagggtgggtagatcaagggtgagggggtattgttatctc
tatatcagaaatttcaatgtattaagtaccattgccaaaaaaagattaaagattattcag
cagatgtctgaattgggcagtggatttaaaattgcatcctacgatcttcaattacggggg
gcaggggagcttttgggtgccgaacaatccgggcatatttcaagcataggatatgaactt
tatatccagatgataaatgatgctgtaaaagaattacggggtaatagtgagaatattata
gaaacagagatccagtccaccataccatattttatccctgctgattatattctggaacca
tctgaaaggatgcgttggtacaataggctgactaatatcgataaacagttgttcaatcaa
tatctggaagagcttacatttaactatggtgatcctccccctcctgtgttgaatcttttg
aaaactatttaccttaagtcgatcgcttcacggattgggataaaaaagattactataatg
aacaaacagataaaattcacattagaacagaataacaaactggatctccaaaagatgtta
aacatatttagtgaattaaagctaaaagggaactttgctcaggacaattccctgcttatc
tactccgaatccccactggataacggtatagtggtggtggagtatttatgtgaatag
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