Chryseobacterium nakagawai: EG343_11590 Help Entry EG343_11590       CDS       T06300                                  Symbol ligD Name (GenBank) DNA ligase D   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism cnk  Chryseobacterium nakagawai Pathway cnk03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:cnk00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     EG343_11590 (ligD)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:cnk03400]     EG343_11590 (ligD) Enzymes [BR:cnk01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      EG343_11590 (ligD) DNA repair and recombination proteins [BR:cnk03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      EG343_11590 (ligD) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S DNA_ligase_OB_2 mRNA_cap_enzyme Motif Other DBs NCBI-ProteinID:  AZA91232 UniProt:  A0A3S4TFA5 LinkDB All DBs Position 2526335..2528218 Genome browser AA seq 627 aa AA seqDB search MLAKSFDKAFDDKDWLFEIKWDGYRAIADLSHDAPLFYSRNGISFLSKFDKIAQDFDQQK YKMILDGEIVAYDNQGKPSFQLLQQIDDHPNLALVYQVFDLLWLNGHSTEELPLVQRKEL LKDALIETDTLKYCDHFPEKGVAFFEQMKKMKLEGMIAKRAGSQYVESSRTTDWLKIKFS NTEEAIICGFTEPRGSRENFGALILGKYVNNELVYCGHTGTGFNHISLKELHQRLEKIII KSSPFESIPKTNMPVTWVQPELVCEIKYSEITKDGIFRHPVFMGIREDKEPEEVKGSTDY TIHPKKSKTMKAKASSKKTEPSEKEKDITLNKHIVKLTNQDKIYFPKDGISKGDVIDYYQ SVAKYILPHLKNRPLSLNRFPNGIEEQGFYQKDAGDHIPDWIKTTQVYSESNDKYIDYIY CNDKATLAYLNNLGCIDFNPWNSSLPDLEHPDYLVLDLDPSKKNSFDEVIETALQVNEIL QSIKIKGYCKTSGSTGIHIYIPMGAQYDFEQVKDFAHILMKQVHEKLPEITTLERSLQKR DRKKIYLDYLQNRTGQTLASAYSLRPKQGASVSMPLDWDELKPGLLPTDYTIENALERIL NKGDLFKPVLGKGIDMMKALELLQNIE NT seq 1884 nt NT seq  +upstreamnt  +downstreamnt atgcttgccaaatcttttgataaggcatttgatgataaagactggctttttgaaataaaa tgggatggctatagggctatcgctgatcttagtcatgatgccccccttttttattccaga aacggaatttcatttttatcaaaatttgataaaatagcccaggattttgatcagcagaaa tataaaatgatcctggatggtgaaattgttgcatacgataatcagggaaaaccaagtttt cagcttttacagcaaatcgatgatcatcccaatcttgctttggtttatcaggtctttgac cttctatggctgaatggtcattctacggaagaacttccactcgtacaacggaaagaactt ttaaaagatgcattaattgaaactgatactcttaaatactgtgatcattttcctgaaaaa ggggttgcattttttgaacagatgaaaaaaatgaagcttgaaggtatgattgctaaacgg gcaggcagtcaatatgtagaaagttcccgaaccacagactggcttaagattaaattttca aatactgaagaagctattatctgtggatttacagaacccagaggctctcgggaaaatttc ggagctttaattcttggaaaatatgtaaataatgagctggtctattgtgggcatacggga actggatttaatcatatttccctaaaagagcttcatcaaagacttgaaaagatcattata aaatcttctccatttgaatccatccccaaaacaaatatgcctgtaacatgggtacaaccc gaattggtctgcgaaatcaaatattcagaaattaccaaagatggtattttccgccatcct gtttttatggggattcgggaagataaggagccagaagaagtaaaaggttcaactgattac acaattcaccctaaaaagtcaaaaactatgaaagctaaagcatcatcaaaaaaaacagaa ccttcggaaaaggaaaaagacatcaccttaaacaaacacattgtgaagctcacgaatcag gataaaatatattttccaaaggatggaattagcaaaggtgatgtcatagattattatcag tctgtagcaaaatatatcctgcctcatttaaaaaaccgtcctttatccctcaatcgtttt cctaatggcatagaagaacagggtttttatcagaaagatgcgggagatcacatccctgac tggataaaaacaactcaggtttactcagaatctaatgacaaatacattgattacatctac tgtaatgacaaggcaaccttagcgtatctgaataacctcggatgtattgatttcaatcct tggaacagttcacttcctgatcttgaacatcctgattatttggttttggatcttgatccg tcaaagaaaaacagctttgatgaggttattgaaacagctcttcaagtcaatgaaatttta caatcaatcaaaattaaagggtattgtaagacttccggaagtacaggtattcatatttat attccgatgggtgcacaatatgatttcgaacaggtaaaagactttgcccatatcctgatg aaacaggttcatgaaaaacttcctgaaattacaacattagaaagaagccttcaaaaaaga gatcgtaaaaaaatatatttggattatttacagaaccgaacaggtcagactttagcaagt gcttatagtcttcgacctaaacaaggtgcttctgtttctatgcctttggattgggatgag ctgaaacctggattattacccacagattataccatcgaaaatgctttggaaagaattcta aataaaggggatttatttaaacctgttctgggaaaaggtattgatatgatgaaggcatta gagttactgcagaatattgaataa

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