Chryseobacterium nepalense: M0D58_09040
Help
Entry
M0D58_09040 CDS
T08142
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cnp
Chryseobacterium nepalense
Pathway
cnp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M0D58_09040 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnp03400
]
M0D58_09040 (ligD)
Enzymes [BR:
cnp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M0D58_09040 (ligD)
DNA repair and recombination proteins [BR:
cnp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M0D58_09040 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
TH1
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
UPQ74198
LinkDB
All DBs
Position
2090553..2092433
Genome browser
AA seq
626 aa
AA seq
DB search
MLAKPHPEAFDDEDWVFEIKWDGYRAIADLSDEPLFYSRNGISFLSKFEKVANDFSVQKH
KMILDGEIVAYDENGRPNFQLLQQIGDNPDLALVYQVFDILWLNGHSTEELPLIQRKELL
KEALVETDVIKYCDHIQEKGISFFNQMKKMKLEGMIAKKADSVYTENHRTSDWLKIKFTN
TEEAIICGFTEPRGSREGFGALILGKYIDGQLIYSGHTGTGFNRESIIELHERLKKIIVK
NSPFETKPKTNMPVTWTQPELVCEIKYSEITKDGIFRHPVFVALREDKEPEEVKNTAGEK
DEATQNTKVMKATAPKKTRPSENEKEITLNRHKVKLTNQDKVYFPKDDVTKGDVIEYYQS
VADYILPHLKNRPLSLNRFPNGIEEQSFYQKDASDNIPDWVKTTQVYSESNDKYIDYIYC
NDKATLAYLNNLGCIDMNPWNSSLPDLDHPDFLVLDLDPSKKNTFDDVIETALQVNEVLN
AIKIKGYCKTSGSTGIHVYIPMGGKYDFDQVKDFAHILMKQVHEKLPEITTLERSLQKRD
NSKIYLDYLQNRTGQTLASAYSIRPKEGASVSMPLDWSEVKKGMKPTDFNIHNALERIKE
KGDLFKPVLGKGIDMMKALESLQDLE
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgcttgcaaaaccgcatcctgaagcctttgacgatgaagactgggttttcgaaataaaa
tgggacggttaccgcgctattgccgatctaagcgatgaacctctcttctattcccgaaac
gggatctcctttttatcaaaatttgaaaaagttgccaatgatttcagtgtacagaaacat
aagatgattctggacggtgaaattgtagcgtatgatgagaacggaagaccgaatttccag
ctgcttcagcaaataggtgacaatccggatcttgcactggtatatcaggtttttgatatt
ctttggctgaacggtcattctacggaagagcttccgctgattcagcgtaaagaactcctc
aaagaagcattggttgagacagatgttatcaaatattgtgatcatatccaggagaaaggc
atttccttttttaaccagatgaaaaaaatgaagctggaaggaatgatcgccaaaaaggca
gacagcgtttacaccgaaaaccaccgtacttccgactggcttaagataaaattcaccaac
acggaagaagccattatctgcggatttacggaaccccgtggatcaagggaaggtttcggt
gccctgatcctgggaaaatacattgacggccaactgatttattcagggcataccgggaca
ggattcaaccgcgaatcaattatagaacttcatgaaagattaaagaaaatcatcgtgaaa
aattccccttttgaaactaagcctaaaaccaatatgcccgtaacctggacccagccggag
ctggtatgcgagattaaatattccgaaatcacaaaagacggcattttccggcatccggtt
ttcgtggcactgcgtgaagataaagaacctgaagaagtaaaaaacaccgccggagaaaaa
gatgaagcaacccaaaatacaaaagttatgaaagctacagcccctaaaaaaacacgtcct
tccgaaaacgaaaaggaaataacattaaacaggcataaggtaaagcttaccaatcaggat
aaagtttatttccctaaagatgacgtaaccaaaggcgatgtcatagaatattaccagtcg
gttgcagactatattttaccacaccttaaaaaccggccgctttctctgaaccgtttcccg
aatggtattgaagagcagagtttctatcagaaagatgccagtgacaatattccggactgg
gtaaaaacaacgcaggtttattctgaatccaacgataaatacattgattatatttactgt
aacgacaaggctactcttgcttatctgaataatttagggtgcattgatatgaacccctgg
aattcttccctgcccgacctggatcatcctgactttcttgtgttagacctggacccatcc
aaaaagaatacttttgacgatgttatcgaaacagccttacaggtgaatgaggttttaaat
gccattaaaattaaaggctactgtaaaacttcaggaagcaccggtattcatgtctatatt
ccgatgggcggaaagtacgattttgaccaggtaaaagattttgcacatattctgatgaaa
caggttcatgaaaagcttccggaaatcacaactttggaaagaagccttcagaaaagagat
aacagtaaaatttaccttgattatctgcaaaacagaaccgggcagactttagccagtgct
tacagcatcagacctaaagaaggggcttccgtttccatgccgctggactggagcgaggta
aaaaaaggaatgaaacctactgactttaatattcataatgctctggaaagaattaaagaa
aaaggagatttgtttaaaccggttctgggtaagggaattgatatgatgaaggctttggag
agcttgcaggacttggagtaa
DBGET
integrated database retrieval system
