Chryseobacterium nepalense: M0D58_12420
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Entry
M0D58_12420 CDS
T08142
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cnp
Chryseobacterium nepalense
Pathway
cnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0D58_12420 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnp03021
]
M0D58_12420 (rho)
03019 Messenger RNA biogenesis [BR:
cnp03019
]
M0D58_12420 (rho)
Transcription machinery [BR:
cnp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
M0D58_12420 (rho)
Messenger RNA biogenesis [BR:
cnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M0D58_12420 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
UPQ74849
LinkDB
All DBs
Position
2796157..2797986
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AA seq
609 aa
AA seq
DB search
MFNIETLRSKSVTELTKILKDLGVKVARNSTDNDKIFAILDFQASNPKVAKEYFNATESS
ITAEEKATEKPAKAPARKAAPKKTAAKPKTEAKAEEAPKAEEKTETEEKPLQEPIQEEVK
AEPAEITEDTSAPAAKKKRKRVSTANAPVTETPQEKPEAHKNTESPEPAPAEERPNNPQT
QARSQKGQHNNNPHNNGNQNKNQNQNHNQNHNQNKQQQQQQQHSERNDEHPEQKKEFSFD
GMVSIEGVLEILPDNYGFLRSSDFSYISSPDDVYVSTAQIRNFGLKTGDTVKGIVRLPKE
GEKYFSLLRPTEVNGRDLAFIKDRVAFEYLTPLFPEEKFNLAGKGSTISTRVVDLFAPIG
KGQRAMIVAQPKTGKTMLLKDIANSIAANHPEVYMMVLLIDERPEEVTDMERSVNAEVIA
STFDEAAEKHVKVANLVLAKAQRMVECGHDVVILLDSITRLARAYNTVTPASGKVLSGGV
DANALHRPKRFFGAARKIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRKI
ANRRIYPAIDLVASSTRRDDLLLDEVTSQRMWILRKYLSEMNPIEAMEFVDKNIKGTLNN
EEFLMSMNK
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacattgaaacgttaaggtcaaaatccgtaacggagctgactaaaatcttaaag
gatttgggcgttaaagttgcaagaaatagcactgacaatgacaaaatctttgcaattctt
gactttcaggcatcgaatcccaaagtggcaaaagaatatttcaacgccacagaaagcagt
ataactgccgaagagaaagccacggaaaaacctgctaaagctcctgccagaaaagctgct
ccgaaaaaaacagcagccaagcctaaaacagaggctaaagccgaagaagccccaaaggct
gaagaaaaaacagaaacagaagagaaacctttacaggagcctatccaggaagaggtaaaa
gcagaaccggcagaaataacagaagatacttcagcaccggctgcaaagaaaaaaaggaaa
agagtttccacagcaaatgcacctgtaacagaaacaccacaggaaaaaccggaagcccat
aaaaacacagaatctccagaacctgctccggcagaagaaaggccaaacaaccctcaaact
caggccagatcccaaaaaggacaacacaacaacaatccgcacaataacggaaatcagaat
aaaaaccaaaaccagaaccataatcaaaaccataatcagaataagcaacagcagcaacag
cagcaacattctgaaagaaatgatgaacacccggaacaaaaaaaggagttcagtttcgat
ggtatggtaagtattgaaggggtactggaaattttaccggataattacggcttccttcgt
tcatcagattttagctatatttcttcgccggatgatgtgtatgtttctactgcccagatc
aggaatttcggattaaaaacaggggataccgtaaaaggcatcgtaagattaccgaaagaa
ggcgaaaaatatttttctttattaagaccaacggaagttaacggacgtgatttggcgttc
attaaagaccgtgttgcttttgaatatttaactccgcttttcccggaagaaaaatttaat
ctggcaggaaaaggatctacaatttctacaagagttgtcgatttgtttgcgcctatcggg
aaaggacaaagagccatgattgttgcccagccgaagaccggtaaaacaatgcttctgaaa
gatatcgccaactctattgcggcaaaccatcctgaagtttacatgatggtacttcttatt
gacgaaaggcctgaagaggtaaccgatatggaaagaagtgtcaatgcggaagttattgct
tcaacctttgatgaagcggcagaaaagcacgtgaaagtagccaaccttgttctggcaaaa
gctcagagaatggtagaatgtggtcatgatgttgtgattctgttagactccattacaaga
ttggcaagagcatacaatacggtaacaccggcttcaggaaaagtactttccggaggggtg
gatgccaatgcgctgcacagaccgaaaagatttttcggagcggcaagaaaaattgaaggc
ggaggatctttaacgattattgcaacggcacttattgatacagggtctaaaatggatgaa
gtgatctttgaagaattcaaagggacaggaaatatggaacttcagctggacagaaaaatt
gccaacagaagaatttatcctgctattgatcttgtagcatcaagcacccgtagagatgat
ttacttcttgatgaggtaacctcgcagagaatgtggattttaagaaagtatctttctgaa
atgaatcctatagaagcgatggaatttgttgataaaaatatcaaaggaactcttaataat
gaagaattcctgatgtccatgaataaataa
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