Cloacibacterium normanense: EB819_12160
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Entry
EB819_12160 CDS
T05730
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cnr
Cloacibacterium normanense
Pathway
cnr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cnr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EB819_12160 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnr03400
]
EB819_12160 (mfd)
Enzymes [BR:
cnr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EB819_12160 (mfd)
DNA repair and recombination proteins [BR:
cnr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EB819_12160 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AZI70592
UniProt:
A0A1E5UC00
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All DBs
Position
2648617..2652042
Genome browser
AA seq
1141 aa
AA seq
DB search
MLKNISQTLIPEFLRKNFGKEIFENLDQNQHISVKGFAGSVPSILVAELFLTQKKDVLFI
IDDKESSNYITSELEEMIGEENVLYFPETHLEPYQVEKTQNANIVLRTEVLNRLNFDKKK
KIIVATASSLSEKVLKKEDFKAISHTIKVGDQLDFDFTEELLNQFNFNYTDFVSEPGEFS
VRGGIVDVFSFAYEKPFRITFFGNEVESIKEFDIETQLSTGKVNDFELVSNMNFAVSGSK
VSLLDLLPKDSFIVTKNAYLTVKKLKDFYEKAEQKFETLSKEIKHQKPEILFVSDEVFLQ
NLEKFKSIDFSSVILNEAKRNEEPLKNKIDSSASLRSAQNDKIKTINLNQTAQPTFHKNF
ELLAEDLKEKKEEGYETWISFSGEKQKERLESIFEELNHDLPFKSFKSELHEGFVDYELK
VSVYTDHQIFDRYQRYKAKNSFAKSEQLTLKDLMSLKVGDYITHIDHGIGKFMGLVKVTN
DGKTQECFKLTYKNNDLLYVSIHSLHKISKYNGPDGREIVLNKLGSPTWKTLKQKTKAKV
KQIAFDLIKLYAQRKTAKGFSFSPDSYLQNELEASFIYEDTPDQEKATQDVKNDMENDGV
MDRLICGDVGFGKTEVAIRAAFKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVSIS
YLNRFRSAKQKNETKEGLKNGKIDIVIGTHQLVGKDIEFKDLGLLIIDEEHKFGVNVKDK
LKTLKANIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVDTQIIGFNEEILRDA
ISYEIQRDGQVYFINNRIENLKDIAGLIQRLVPDARVITGHGQMDGKELEARILDFMEGK
YDVLVSTTIVESGVDVPNANTIFINDAQKFGMADLHQMRGRVGRSNRKAFCYLITPPFDM
MTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQE
ALEELQNEDDFQDLFENEEDRKKLFKSQKEVNIDTDFELMLPDSYVNSTEERLSLYQKLA
EILTKEELQKFENELVDRFGNLPKEAINLLKSVELKWLAAEIGFDKIVMKNGIFLGYFPD
NPQDKFYQSEKFRNIIAYLSQNPQEAQLKEKSGKEGNQLMMRKDGVKNVDEVNVLLTKIL
S
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaaaatattagtcaaacgcttattcctgagtttttaagaaagaattttggaaaa
gaaatttttgaaaatttagaccaaaaccaacatatttctgtgaaaggttttgcaggttct
gttccgtctattttggtggcagaattatttcttacacagaagaaagatgttctttttatc
attgacgataaagaatcttctaattatatcacttcggaattagaggaaatgataggcgaa
gaaaacgttttgtattttcctgaaacgcatttagaaccttatcaagttgagaaaactcaa
aatgcaaacatcgttttacgaaccgaagttctcaatcgtttgaattttgataaaaagaaa
aaaattatcgttgccaccgcttcttcgctttcagaaaaagtgttgaaaaaggaagatttc
aaagcgatttctcacacgataaaagttggcgaccaactggattttgattttactgaagaa
ttattgaatcagttcaattttaattataccgatttcgtttctgaacctggagaattttct
gtgagaggcggaattgttgacgttttttctttcgcttacgaaaaacctttcagaattact
tttttcggaaatgaagtagaaagtattaaggaatttgacatcgaaactcaactttccaca
ggaaaagtcaatgactttgaattggtttctaatatgaattttgcggtttcaggaagcaag
gtttctctattggatttattgccaaaagatagtttcattgtgactaaaaatgcttatctc
accgtaaaaaaactcaaagatttctacgaaaaagcagaacaaaaatttgaaacgttaagc
aaagaaatcaagcatcaaaaaccagaaattcttttcgtttctgatgaagttttcctgcaa
aatttagaaaaattcaaaagtatagatttttcatctgtcattctgaatgaagcaaagcga
aatgaagaacctcttaaaaataaaatagattcttcggcttcacttcgttccgctcagaat
gacaaaattaaaacgataaatctcaatcaaaccgcacaaccaaccttccacaaaaacttt
gagcttctcgccgaagatttaaaagaaaaaaaagaagaaggttatgaaacttggatttct
ttttcgggagaaaaacaaaaggaaagattagagagtatttttgaggagctgaatcacgat
ttaccgtttaaatctttcaaatctgagcttcatgaaggctttgtagattacgaactaaaa
gtttcggtatatacagatcatcagatttttgatcgttaccaaagatataaagccaaaaat
tcttttgccaaatctgagcaattaacgctaaaagatttaatgtctctaaaagtgggcgat
tacattacgcatattgaccacggaattggaaaattcatgggattggtgaaagttaccaat
gatggaaaaacacaagaatgtttcaaattgacgtataaaaacaacgatttactctacgtt
tctattcattcgcttcataaaatttcaaaatataacggtccagatggaagagaaattgtt
ctgaataaattgggttctccaacttggaaaactttaaagcaaaaaaccaaagcaaaagtt
aaacaaattgcatttgacctcatcaaattatatgctcagagaaaaacggcaaaaggtttt
tcgttttcgccggattcttatttgcagaatgaattagaggcgagtttcatttacgaagat
actccagatcaggaaaaagcaacgcaagatgtgaaaaatgatatggaaaatgatggtgta
atggaccgcttaatctgtggagatgtaggtttcggaaaaacagaagtggcaattcgtgcg
gctttcaaagcggcaaccgatggaaaacaagtcgcggttttagttcctaccacgattttg
gcatttcaacattaccgaagtttcaaagaaagattgaaagattttcctgtcagtatttcc
tatttgaaccgtttccgttctgctaaacaaaaaaatgaaaccaaagaaggactcaaaaat
ggtaaaattgatattgttatcggaacgcatcaattggtaggaaaagatatagaattcaaa
gatttaggtcttttaattattgacgaagaacataaattcggcgtaaatgtaaaagataaa
ctcaaaacgttaaaagcaaatattgacactttgactttaaccgcaacgccaattccgaga
acgcttcagttttctttgatggcagcaagagatttatcggtcattaaaacgccaccgcca
aatcgtcaaccagttgatacacaaattattggatttaatgaagaaattcttagagatgcg
atttcttacgaaattcaaagagacggacaggtttatttcattaataatagaattgaaaat
ctgaaagatattgcaggattaattcagcgtttggttccagatgcgagagtcattacaggt
cacggacaaatggacggaaaagaattggaggccagaattctggattttatggaagggaaa
tatgatgttttggtttccaccacgattgtagaatctggagtagacgttccgaatgcgaac
acgattttcattaatgatgcgcagaaattcgggatggcagatttgcaccaaatgcgaggt
agagttgggcgaagcaaccgaaaagcgttttgttatctgattacgccaccgtttgatatg
atgacttcggatgccagaaaacgtttggaagcgatagagcagttttcggatttgggaagc
ggtttccagattgcgatgaaagatttagaaatcagaggagctggagatttactgggagca
gaacagagtggttttatcaatgaaatgggctttgaaacctatcaaaaattgatgcaagaa
gctttggaagaattacaaaatgaagacgatttccaagatttatttgagaatgaagaagac
cgcaaaaaattattcaaatctcagaaagaagtcaacattgatacagattttgagttgatg
ttgccagattcttacgtgaattctacggaagaaagactgtctttatatcaaaaattggca
gaaatccttactaaagaagaattgcaaaaatttgaaaatgaattggttgatagattcggg
aatttaccgaaagaagccatcaatttactgaaatctgtagaactgaaatggctcgcagcg
gaaataggttttgataaaatcgtgatgaaaaacggaatctttctaggctatttcccagat
aatcctcaagataaattttaccaaagcgaaaaattcagaaatattatcgcttatctttct
caaaatccacaagaagctcaacttaaggaaaaatctggcaaagaaggcaatcaactcatg
atgagaaaagatggtgtgaaaaatgtagatgaggtaaatgttctattgaccaaaatttta
agttag
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