Contarinia nasturtii (swede midge): 116341688
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Entry
116341688 CDS
T08003
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116341688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116341688
03041 Spliceosome [BR:
cns03041
]
116341688
03009 Ribosome biogenesis [BR:
cns03009
]
116341688
03016 Transfer RNA biogenesis [BR:
cns03016
]
116341688
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116341688
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
116341688
Spliceosome [BR:
cns03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116341688
Complex C
U4/U6.U5 tri-SnRNP related factors
116341688
Ribosome biogenesis [BR:
cns03009
]
Eukaryotic type
Pre-60S particles
Helicases
116341688
Transfer RNA biogenesis [BR:
cns03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
116341688
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
ResIII
Helicase_C
nSTAND3
ATPase_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
116341688
NCBI-ProteinID:
XP_031624766
LinkDB
All DBs
Position
Unknown
AA seq
1038 aa
AA seq
DB search
MADIDELFGGFDEPIGFDEGEAANPIVVDEKNNEEQQNESSLSKPDKRPLEDETERNEDE
DKRKKPRTDNGNDSKVTESILDDIRLEEIESRITVHVIESPESCTHEVAVYPGQPYEPLA
PVTGPPAKEYSFVLDPFQKEAIQCIENEQSVLVSAHTSAGKTVVAEYAIARSLNNKQRVI
YTTPIKALSNQKYREFSEEFKDVGLVTGDATINPTASCLIMTTEILRNMLYRGSEIMREV
GWVIFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFCEWITYVHKQNCHV
VYTDYRPTPLQHYLFPAGGDGIHLVVDEKGQFKEDNFNAAMNVLATVGEASKGDQKGRKG
GFKGTNKGESNIYKIVKMIMERNMAPAIVFSFSKKECEVYAMQMAKLDFNSLEEKKLVDE
VFNNAMDVLSEEDRRLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGLLKTLFAT
ETFAMGLNMPARTVLFTSARKFDGKEMRWITSGEYIQMSGRAGRRGLDDKGIVILMIDEK
VSKVTGKEIVQGKPDPINSAFHLTYNMVLNLLRVEEINPEYMMERSFFQFQNQSSIPDLY
RRVEKKQKEVDSLTIPMESSIATYYHIRDQLDKLGREFRSYLTKPVYLTPFLQPGRMIKV
QKESGDEFDWGIIVNFRKQQSDEKNPAKSETVTIVDILLHVDDDYEKTNTAKPCPANKQG
SVEVVPVLHTLISRISSLRVYYPKDLRPAENRRSVLKTVNEVKKRFPKGPPLLNPINDMN
IKDSDFKRVVETIDKFEKQLYSHPLHESPQLSDLYAEYSKKIQLLAELKGEKDALRKAKS
LLQMDELKHRKRVLRRLGYCTQADVIEFKGRVACELSSADELLITEMIFNGVFNNLSIEQ
SVALLSTFVCDERSNEAPKTAEELSGPLRQMQDLARRIAKISIECKLEMDEENYVERFKP
FLMDVVLAWCKGASFKAIVGMTDIFEGSIIRCMRRLEELLRQMCQAAKTIGNTELENKFS
EGIRLLKRDIVFAASLYL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggctgatattgatgagctctttggtggtttcgatgaaccgattggatttgacgaaggt
gaggctgcgaatcccattgttgttgacgaaaaaaacaatgaagaacaacaaaatgaaagt
tccctatccaaaccggacaaacgaccattggaagatgaaacagagcgaaatgaagatgaa
gataagcgaaaaaaaccacgaaccgacaatggaaatgattcaaaagtgaccgaatcaatt
ttggacgacattcgattagaagagattgagtcacgcattacagttcatgtcattgaatcg
cccgaatcgtgtacacatgaagttgcagtttatccaggacaaccgtacgaaccattggca
ccggtaactgggccaccagccaaagaatattcatttgtcctggatccatttcaaaaggaa
gcaatacaatgcatcgaaaatgaacaatcggtgctggtgtcagctcatacatcggccggt
aaaactgttgtagccgaatacgccattgcccgatcattaaataacaaacaacgtgtcatt
tatacaacgccaattaaagcattgtcaaatcaaaagtaccgtgaatttagtgaagaattc
aaagacgttggtctagtcaccggtgatgcgacgatcaatccgacagcttcatgtttgatt
atgacaacggaaattttacgaaacatgttgtatcgcggttctgaaattatgcgagaagtt
ggttgggtgattttcgatgagatccattatatgcgtgacaaagaacgtggtgttgtatgg
gaagaaacattgattttactgcctgataatgtgcattacgttttcttatcggcaaccatt
ccgaatgctcgccaattttgtgaatggatcacctatgttcataagcaaaactgtcatgtt
gtctacactgattatcggccaacaccattgcaacattacttatttccggctggcggcgac
ggcattcatctggtggttgatgaaaagggtcaattcaaagaggacaatttcaatgcagcc
atgaatgttttggccaccgtcggtgaagcatcaaaaggcgatcaaaagggacgtaagggc
ggttttaaaggtaccaataaaggtgaatcgaacatctataaaattgtaaaaatgattatg
gaacgaaatatggcaccggccatcgtattttcattcagtaaaaaagaatgtgaggtatat
gcaatgcaaatggccaaattagattttaattcactcgaagagaagaaattagtcgatgaa
gtttttaacaatgccatggatgtactatcggaagaagatcgtcgattgccacaagttgag
aatgtattgccgctattacgacgtggtattggtattcatcatggtggattattgccgatt
ctaaaggaaacaattgaaattctattcggcgaaggtttactcaaaacactgtttgcaacc
gaaacatttgccatgggattaaatatgccggctagaacagttttgtttacgagcgcccga
aaatttgatgggaaagaaatgcgatggattacatctggggaatacatacaaatgtcaggt
cgtgccgggcgacgtggtctcgatgacaaaggtattgtcattttaatgatcgatgaaaaa
gtgtcaaaagttactggcaaagaaattgttcagggcaaaccggatcccattaattcagcg
tttcatttgacctacaacatggtcttgaatttgcttcgtgtcgaagaaatcaatccagag
tacatgatggaacgaagctttttccaatttcaaaatcaatcatcgataccggatttgtat
cgacgcgtcgaaaagaaacaaaaagaagtcgattcgctaactattccaatggaatcaagt
atcgccacatactatcacattcgagatcaattggataaattgggcagagagttcagatcg
tatctaacgaaaccggtttatttaacaccgttcttgcaaccgggccgaatgataaaagta
caaaaagaaagtggcgacgaattcgattggggaatcattgtcaatttccgtaaacaacaa
agcgacgaaaaaaatccagccaaatcggagacagtaacaattgttgatattttacttcat
gttgatgacgattatgagaaaacaaatacggccaaaccatgcccggcgaataaacaaggt
tccgttgaggttgtacccgtgttgcatacattaatatcacgaatcagttcgctgcgtgtc
tactatccaaaagatttgcgaccggcagaaaatcggcgctctgttttgaaaacggtgaat
gaagtgaaaaagcgttttccaaagggtccaccgctgctaaatccaatcaacgacatgaat
atcaaagattcagattttaagcgtgttgttgaaaccattgataaattcgaaaaacaattg
tacagtcatccattgcatgaatcgccgcaattgagtgacctttatgctgaatattcgaag
aaaattcaactattggccgaattaaaaggcgaaaaagacgcactacgcaaagcaaaaagc
ctcttacaaatggatgaactcaagcatcgcaaacgagttttacgacggcttggatattgt
acacaggccgatgtgattgaattcaaagggcgagtagcctgtgaactcagttcggcggac
gaattgctcatcaccgagatgattttcaatggtgtctttaataatttgagcattgaacag
agcgttgcattattgtcgacttttgtgtgtgacgaacgaagtaatgaagcgccaaaaaca
gccgaagaactttctggcccacttcgtcaaatgcaagatttggcacgacgcatcgcaaaa
atatcgattgaatgcaaacttgaaatggatgaagaaaactatgtggaacgtttcaaacca
tttttgatggatgtcgttttggcttggtgcaagggtgcctcatttaaagcaattgttggt
atgacagacatttttgaaggttcaattattcggtgtatgcgacgattggaagaattattg
cgacaaatgtgtcaagctgccaagacgattggtaatacagaactagaaaataaattctcc
gaaggaattcgactgctcaaacgagacatcgtatttgccgcctcattgtatctttaa
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