Contarinia nasturtii (swede midge): 116342094 Help Entry 116342094         CDS       T08003                                  Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism cns  Contarinia nasturtii (swede midge) Pathway cns03030   DNA replication cns03410   Base excision repair cns03420   Nucleotide excision repair cns03430   Mismatch repair Brite KEGG Orthology (KO) [BR:cns00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     116342094    03410 Base excision repair     116342094    03420 Nucleotide excision repair     116342094    03430 Mismatch repair     116342094  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:cns03032]     116342094    03400 DNA repair and recombination proteins [BR:cns03400]     116342094 Enzymes [BR:cns01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      116342094     6.5.1.6  DNA ligase (ATP or NAD+)      116342094     6.5.1.7  DNA ligase (ATP, ADP or GTP)      116342094 DNA replication proteins [BR:cns03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     116342094  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      116342094 DNA repair and recombination proteins [BR:cns03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      116342094    NER (nucleotide excision repair)     Other NER factors      116342094    MMR (mismatch excision repair)     Other MMR factors      116342094 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  116342094 NCBI-ProteinID:  XP_031625447 LinkDB All DBs Position Unknown AA seq 876 aa AA seqDB search MYAPKLLRIVSICNRNLVVATRQLLSSQQYLQSQNVIVNLQRYKSNVKSKSLTSVLISSN SSPDDSKNVSKEKVQKKRRRIISSDSSSDDGNSPAKSKPAENEMSPPTKRKSTSTVVKQE EISPGKENDKSKKNETAKKTPISTPVKTPIKTPKKSPTKTSSKKKTQPKSDTKTKSKKTS PSPAKVKEEKMDTSPSEAKEEKPKPHPFFTKPKDQATDGKPDDLSYNPGKANYHPIKDCF WKHGEKTPYLALARTFEVIEENSSRLRMIEILANFFRSVIVHSPSDLVACVYLSLNKLAP DYEGLELGIAETSLMKVIANTTGRSLAQIKADAQSTGDLGIVAEKSKSNQRMMFTPAALT VDGVFTKLKDIANLSGHSAMNKKVDKIQSIFVACRHSEARFIMRSLLGKLRIGLAEQSLL QALSQACAYTPPNQYANGESFPPQVINAKPTKEQIEEVALTIKTTYCQCPNYDRICDVLL KHGVEELLEKCQMAPGTPLKPMLAHPTKGVSEVLQRFDGIKFTCEYKYDGERAQIHIAED GTVSIYSRNQENNTTKYPDIIARIGDAKGADVKSCILDSEVVAWDEERKQILPFQVLSTR KRKDADKEEIKVKVCVYLFDLLYLNGEPLVTKPFAERRRLLYDNFKEVEGDWKFATSLDT NDIDELQSFLNESIKGNCEGLMVKTLDDTYEIAKRSRNWLKLKKDYLEGAGDSLDLVVIG GYKGKGKRTGTYGGFLLACYDADNEEYQSICKLGTGFSDDDLVKHSEFLKQHVIPSPKSY YRFESSLEPDDWFDVVQVWEVLCADLSLSPVHQAAKGIVDQEKGISLRFPRFIRIRDDKS AEDATSAQQVADMYSNQDQIKNQEKSGNKNIEDDFY NT seq 2631 nt NT seq  +upstreamnt  +downstreamnt atgtatgcaccaaaattattaagaatcgtatcaatttgtaatcgtaatttagttgtagcc acacgtcaattgttatctagtcaacaatatttacaatcacaaaatgttatcgttaattta caacgatataaatcgaatgttaagagtaagagtttaactagtgtattaattagttcgaac agcagtcccgatgacagtaaaaatgtgtccaaggaaaaagtgcagaaaaaacgtcgtcgc atcatcagcagcgatagttccagcgatgatggtaacagtccggccaaaagtaaaccggct gaaaatgagatgtcgccgccgacaaagcgaaaatcaacaagtacagttgtaaagcaagag gaaatttcgccaggtaaagagaatgacaagagcaaaaagaatgaaacagcaaagaaaaca ccaatttcaactccggtcaaaaccccgataaaaactccgaaaaaatcgccgaccaaaacg tcgtcgaaaaagaagacacaaccgaaatcggatacaaagacaaaatcaaagaagacatca ccatcaccggccaaagttaaagaagaaaaaatggacaccagcccatctgaagcgaaagaa gaaaaaccaaaaccacatccattcttcaccaaaccaaaggatcaagcgaccgatggcaaa ccagatgatctctcatacaatccaggcaaagccaattaccatcccatcaaagattgcttc tggaaacatggagaaaaaacaccatacttggctttggcacggacattcgaggtgattgaa gagaattccagtcgattgcgtatgattgaaattctggccaacttttttcgatcggtcatt gtacacagtccatccgatttggtggcatgtgtttatttatcgcttaacaaattggcaccg gactatgaaggtttggaattgggcattgccgaaacgtcattgatgaaagtgattgcaaac acaacgggtcgtagtttggctcaaatcaaagccgatgcacaaagcaccggtgatttgggc attgtggccgagaaatcaaagagcaatcaacgcatgatgtttacacccgctgcattgact gtggacggtgtgtttacaaaattaaaagatatcgcaaatctgagtggacattcggcaatg aataagaaagttgataaaatccaatcgattttcgtggcatgtcgacattcagaagcacgt ttcattatgcgatcactattgggtaagcttcgtattggtttagcggaacaatcactattg caagcactgtcacaggcctgtgcctatacaccacccaatcagtatgcaaacggagaatca ttcccaccacaagtgattaatgcaaaaccaacaaaagaacaaattgaagaggttgctttg acaatcaaaacaacttactgccaatgtccgaactatgatcgtatttgtgatgtgttgttg aaacatggtgttgaagaattattggaaaaatgtcaaatggcaccaggcacaccattaaag cctatgttggctcatccaacgaagggagtttcagaggtgttacaacgttttgatggcatt aaatttacatgtgaatacaaatatgatggtgaacgtgctcagattcacattgccgaggat ggtacagtaagtatttacagtcgaaatcaagagaacaatacaaccaaatatccggacatt atcgctcgaatcggcgatgcaaaaggtgccgacgtaaaatcgtgcattttggattcagag gttgtggcttgggatgaagaacgtaagcaaattctaccgttccaagtgttgagtacacgc aagcgtaaagatgccgacaaagaagaaatcaaagtgaaagtgtgcgtttatctattcgat ttattgtaccttaatggtgaaccattggtgacaaaaccatttgcggagcgtcgtcgtctg ttgtatgacaatttcaaagaggttgagggtgactggaaatttgccacctcactcgacacc aacgacatcgatgaattgcaatcattcctaaacgaatcgatcaaaggtaactgtgaaggt ttgatggtgaaaactctggatgatacatacgaaattgccaaacgatcgcgaaattggctc aaattgaaaaaagactatttggaaggtgctggagattcgttggatttggtggtgatcggt ggatacaaaggcaagggcaaacgaactggaacttatggtggtttcttgctcgcatgttat gatgctgataacgaagagtatcaatcgatttgtaaacttggcaccgggttcagcgatgat gatttggttaaacattcggaatttttgaagcaacacgtcattccatcaccaaagtcgtat tatcgcttcgaatcgtcacttgagcccgatgattggtttgacgttgtacaagtttgggaa gtactatgtgctgatctctcactcagtccggttcatcaagcagccaaaggcattgttgat caagagaaaggaatctcattgcgatttccccgattcattcgtattcgcgatgataaatcc gctgaagatgcaacatccgctcaacaagttgctgacatgtactcgaatcaagatcaaatc aaaaaccaagaaaaatccggaaacaaaaacattgaagacgatttttattga

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