Contarinia nasturtii (swede midge): 116346930
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Entry
116346930 CDS
T08003
Name
(RefSeq) ATP-dependent RNA helicase abstrakt
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
cns
Contarinia nasturtii (swede midge)
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cns03041
]
116346930
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116346930
Spliceosome [BR:
cns03041
]
Complex C
Other components
Complex C specific factors
116346930
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
zf-CCHC
ResIII
Phage_endo_I
Pilus_CpaD
Motif
Other DBs
NCBI-GeneID:
116346930
NCBI-ProteinID:
XP_031633106
LinkDB
All DBs
Position
Unknown
AA seq
613 aa
AA seq
DB search
MSYSPSKKRYRRDDDKQKADSDDEYVPYVPVRERKKNELIRLGRIAHIAENANKSSSENE
SDNEQSQEVLGRKYNISLLDQHTELKKLAEAKKISAAEKQLKEEEKILESVAERKALMAA
SELAKAIVYEDPIETSWRPPRHVLAMPNFKLDEIRQKHRILVEGELIPPPIRTFREMKLP
KSILMALDKKGIKKPTPIQLQGIPTILSGRDLIGIAFTGSGKTLVFVLPIIMFCVEQEVC
LPFIRNEGPYGLIICPSRELAKQTHEIIRFFCDHLRQDGLPEVRSCLAIGGVPVTESIET
IQKGVHIMVATPGRLMDMLDKKMVNLRVCRYLCMDEADRMIDMGFEEDVRTIFSYFKGQR
QTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVIQEVEYVKQEAKVVYLLECLQ
RTSPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSKAVEAFRSQIKDVLVAT
DVASKGLDFPNVQHVINYDMPDDVENYVHRIGRTGRSSTKGLATTFINKSTEQSVLLDLK
HLLIEAKQKVPPFLAELCSESEQLLEVGDTQGCSYCGGLGHRITECPKLEAVQNKQASNI
GRRDYLSNTAADY
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtcatattcaccgtcaaagaagcgttatcgtcgtgatgatgataaacaaaaagcggac
agcgatgatgagtatgtgccgtatgtgccagttcgtgagcgtaaaaagaatgaattgatt
cgcttaggtcggatagcgcacattgctgaaaatgcaaataaatcatcgagtgaaaatgaa
agcgacaatgagcagagccaagaagtccttggaagaaaatacaatattagtttattggat
caacacaccgaactgaaaaaattggccgaagcgaagaaaatcagtgcggctgaaaaacaa
ctaaaagaagaagagaaaattctagaaagtgttgccgaaagaaaggcgctgatggctgca
tccgaattggccaaagccattgtctatgaagatccaattgaaactagttggcgtccgccg
cgtcatgtacttgcaatgcccaactttaagttagatgaaattcgacaaaagcatcgaatt
ttagtcgaaggtgaactaattccgccaccaatacgaacatttagagaaatgaaattacca
aagtcaattctaatggcattggataagaaaggcataaaaaaaccgacaccgattcaattg
caaggcattccaacgattttgtcgggtcgtgatttgattggcattgcatttacaggttcg
ggaaagacattggtttttgtattgccaattataatgttttgtgtcgaacaagaagtatgt
ttgccattcattcgaaatgaaggaccgtatggtttgatcatttgtccgtcacgtgaattg
gccaaacaaacacatgaaattattcgattcttttgcgatcatttgaggcaagacggtttg
ccagaggtgcgatcatgtttggccattggtggtgtgcccgttaccgaatccattgaaacc
attcaaaagggtgtacacattatggttgcaacaccaggccgtttgatggacatgctcgat
aaaaagatggtgaacttacgcgtttgccgatatttatgcatggacgaagccgacagaatg
attgacatgggcttcgaagaagatgttcgtacaattttctcgtacttcaaaggacaacgt
caaacactactcttttcagctactatgccgaaaaagattcaaaatttcgctcgatcagcc
ctggtgaagccgataacaataaatgtgggacgagctggtgccgcatcaatgaatgtcatt
caagaggttgagtatgtgaaacaggaggctaaggtggtttatctattggaatgtttacag
cgtacctcaccgccagtactgattttcgccgaaaagaaacaagatgtggacgcaattcat
gaatatttgctgttgaaaggtgtcgaagcggttgccattcacggtggaaaagatcaagaa
gagcgttcgaaagccgttgaagcgtttcgatcacaaattaaagacgtacttgttgctacc
gatgtcgcatcaaaaggtttggattttccaaacgtacagcatgtcataaactatgatatg
cccgatgatgtggagaattatgtgcacagaattggaagaacgggtcgttcgtcaaccaaa
ggtttggccacaacattcatcaataaatcaaccgaacaatcggtactgttggatttgaaa
catttattgattgaggcaaaacaaaaggtaccaccatttctggccgaactttgttcggaa
agcgaacagctattggaagttggcgatacacagggttgcagctattgtggtggtctgggt
catcgaattaccgaatgtccgaaattggaggccgtacaaaacaaacaagcctcgaatatc
ggacgcagagactacctttcaaacacagcggccgactattaa
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