Contarinia nasturtii (swede midge): 116350687
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Entry
116350687 CDS
T08003
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03013
Nucleocytoplasmic transport
cns03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116350687
03015 mRNA surveillance pathway
116350687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116350687
Enzymes [BR:
cns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116350687
5.6.2.5 RNA 5'-3' helicase
116350687
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116350687
mRNA cycle factors
Common to processing body (P body) and stress granule
116350687
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
ATPase
nSTAND3
SRP54
AAA_22
AAA_16
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
116350687
NCBI-ProteinID:
XP_031638439
LinkDB
All DBs
Position
Unknown
AA seq
1128 aa
AA seq
DB search
MSVDAYGSSSQTLTFLDTEEHELIGGADTQGTDFDFRDFTIPSQSQTQASQLDHLTGGSS
QLNGVGTSKRNDSTNQKLAIISGGMAELQFEEEDDDAVTQVQELPSHACKYCGIHEPSTV
VMCNICKKWFCNARGNTSGSHIVNHLVRAKHREVTLHSDGPLGETVLECYSCGVRNVFIL
GFIPAKADSVVVLLCRQPCAAQSSLKDMSWDQEQWKPLISDRCFLSWLVKVPTEQDQMRA
RQISASQINKLEDIWKENNDATFQDLEKPGVDTEPAQVLLRYEDGFQYQKVFGPLVRLEA
EYDKRLKESQTQENIEVRWDVGLNKKTIAFFTLAKSDGDMKLMHGDELRLSYVGEMHKAW
SSTGHVIKVPDNYGDDVGLELKNSASAPIECTSNFVIDFIWKGTSFDRMQYALNKFAVDE
NSVSNYIYSRLLGHGRQDGSDEITFRNQSLPKHFSAPNLPDLNRSQVYAVKHALQRPLSL
IQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHKTNLKVVRVCAKSR
EAIDSPVSFLALHNQIRNMKSNSELQKLQQLKDETGELSSSDEKRYRALKKTSERELLEA
ADVICCTCVGAGDPRLSRIKFHSILIDESMQSTEPECIVPVVLGAKQLILVGDHCQLGPV
VMCKKAAKAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVRADE
RKMKNDFPWPQPDRPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLKCRVSPDQI
GIITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGI
GFLNDPRRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLNFYKERKLLVEGSLNNLKESM
VQFSKPKKIVNTFNPGTHFMSNTMYDAKEAMGAGSFYDKNGAINNGGLGGFNGPYMQQQM
PMQQPMPNAGYQRNPADMFGRNPNHDPISYISQDRVQAAMNNNMPVPVGMFMNTMSNVPM
NRFYNQAAQAAQQNQRRKPSKTLPKPRPNNSQFSQGSPLTQGMSQNMSLSQQPGFSLSQQ
PDLLFSDYMSGDYQSQMDNILSQDSSFQSQGANFGATSSGVPPSNRFP
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgatgcgtacggttcgagctcgcagacgctcacatttttggatactgaagaa
catgaactgatcggtggagccgatacacagggcacggactttgactttcgtgattttacc
attccatcacaaagtcaaactcaagcttcacaattggatcatttgacggggggatcgagt
cagttgaatggagttggtacaagtaaacgaaatgacagcacaaatcaaaagttggcaatt
atctcgggcggaatggccgaattgcaatttgaagaagaagatgatgatgcggtgacacaa
gtacaagaattaccatcacatgcatgcaaatattgcggtatacatgagccaagtaccgtt
gtcatgtgtaatatttgcaaaaaatggttttgcaatgcacgaggaaatacatccggttcg
cacattgtaaatcatcttgttcgtgcaaagcaccgtgaagttacacttcactccgatggg
ccacttggcgaaacggttttggaatgctattcatgtggtgttcggaatgtgttcattttg
ggttttataccggccaaagccgattcggtcgttgtgttgctgtgcagacaaccgtgtgcc
gctcaaagttcactcaaagatatgagctgggaccaagaacaatggaaaccactcatatcg
gatcgatgctttttaagctggttggttaaagttccaaccgaacaagatcaaatgcgagcc
cgacaaatttccgcaagtcaaataaataagctggaagacatttggaaggagaacaacgat
gcaacatttcaagatctcgaaaagcccggcgttgatacagagccagcacaagtgctactt
cgctatgaagatggttttcaatatcaaaaagtatttggtccattggttcgcttagaagct
gagtacgataaacgattgaaagagtctcaaacacaagagaatatcgaagttcgctgggac
gttggtttgaataagaaaaccatcgcgtttttcacactagccaaaagtgacggcgatatg
aagctgatgcatggtgacgaactacgtttgtcatacgtcggagaaatgcataaagcatgg
tctagcactggacacgtcatcaaagttccggataattatggcgatgatgttggtttggag
ttgaaaaacagtgccagcgctccgattgaatgcacatccaattttgttattgatttcatt
tggaaggggacatcgtttgacagaatgcagtatgctttgaataaatttgcggttgacgaa
aattccgtttcgaattacatctattcacgtttactcggccatggcagacaggatggatcc
gatgagattacgttccgtaatcaatcgttgccaaaacatttcagtgcaccaaatttaccc
gatttgaatcgatcgcaagtgtatgccgttaagcatgcactacagcgcccacttagcttg
attcaaggtccacctggtactggaaaaactgtaacatccgcaacgatcgtgtatcaactc
gttagacagaatggtggacctgtgctcgtttgtgcgccgagtaatacagccgttgaccaa
cttaccgaaaaaatccataaaaccaatttgaaagtagtacgtgtttgtgcaaaatcgcgt
gaagcaattgattcgcccgttagttttctcgctttgcacaatcaaatccgaaacatgaaa
agcaattcggaattacaaaaactgcaacagctcaaagacgaaaccggtgaactttcatcg
agcgatgaaaaacgctatcgagcactaaagaaaacatccgaacgtgaattattggaagca
gccgacgttatttgttgtacatgtgttggagctggtgatcccagattgtcacgcatcaaa
ttccattcaattttgatcgacgaaagtatgcagtccaccgagccggaatgtattgtaccc
gttgttcttggagccaaacaacttattttagttggggatcactgtcagttgggtccagtg
gttatgtgcaagaaagcagcaaaagcaggattatcccaaagtttattcgagcgattggtc
gttttgggcattcgtcctttccgtttggaggtccaatatcgaatgcaccccgagttatcg
caattcccttcgaatttcttctatgaaggtagtttgcagaatggtgttcgtgctgatgag
cgaaagatgaaaaatgacttcccatggccgcaaccagatcgtccgatgtttttcttggtg
actcaaggtcaagaagaaattgctggttcgggaacatcgtacttgaatcgaacggaagca
tcaaatgttgaaaagatcacaacaagattcttaaaatgccgtgtcagtcccgaccagatt
ggtataattacaccgtacgaaggtcaacgtgcatatttggtacaatacatgcagtaccaa
ggttcattgcattcgaaattatatcaagaaatcgagattgccagcgttgatgcctttcaa
gggcgtgagaaagacattataatcatgtcttgtgttcgttcgaatgaacatcaaggaatc
ggtttcttaaatgatccacgtcgattgaatgtcgctttgactcgtgcaaaatacggtata
atcattgttggcaaccccaaagtattgtcaaaacaaccgctttggaatcatttgctaaat
ttctacaaagagcgtaaactattggtggagggttctctaaataatctcaaagagtcgatg
gttcaattctccaaaccgaaaaagattgtgaacacttttaatccaggaacccattttatg
tcgaatacaatgtatgatgcaaaagaagcaatgggagccggatcattttatgataagaat
ggagcaataaataatggtggcctgggtggattcaatggtccgtatatgcaacaacaaatg
ccaatgcaacaaccgatgccaaatgcaggctaccaaagaaatccagccgacatgtttgga
cgaaatccaaatcatgatccgatcagttacatttcacaagatcgtgtacaagcggctatg
aataataatatgcccgtacccgttggcatgttcatgaacacaatgtcaaatgtcccaatg
aatcgtttctacaatcaagcagcacaggcggctcaacaaaatcaacgtcgtaaaccatca
aagactttgccgaaaccacgtcccaataactctcaattcagccaaggcagtccgcttacc
cagggaatgtcacagaatatgagcttatcacagcaacctggtttcagtttgtcacagcaa
cccgatctgctttttagtgattacatgagtggtgactatcaatcacaaatggataatatt
ctgtcacaagattcatcatttcagagtcaaggcgcaaattttggtgcaacaagcagcggt
gttccaccgtcaaatcgttttccgtaa
DBGET
integrated database retrieval system
