Cedecea neteri SSMD04: JT31_05980
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Entry
JT31_05980 CDS
T03298
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
cnt
Cedecea neteri SSMD04
Pathway
cnt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JT31_05980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnt03400
]
JT31_05980
DNA repair and recombination proteins [BR:
cnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JT31_05980
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JT31_05980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
SBDS_domain_II
UB2H
AAA_22
AAA_30
AAA_33
DUF87
Motif
Other DBs
NCBI-ProteinID:
AIR04182
UniProt:
A0A089PV01
LinkDB
All DBs
Position
complement(1292827..1294842)
Genome browser
AA seq
671 aa
AA seq
DB search
MSKAFKLNSAFKPSGDQPEAIHRLKDGLENGLAHQTLLGVTGSGKTFTVANVIADLQRPT
MVLAPNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLTELQ
YTRNDQAFQRGTFRVRGEVVDIFPAESDDLALRVELFDEEVERLSLFDPLTGQIDQTIQR
FTIYPKSHYVTPRERIVQAMEDIKVELAERRKFLLANNKLLEEQRIAQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGEDIVDQVVRPTGLLD
PLIEVRPVGTQVDDLLSEIRKRVAVNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNINGKAILYGDKITPSMAKAIGETERRREKQQRYNEENGITPQGLNKRVVDVLQLG
EGMAKTKGRAKTKARSVIEDDEIVMTPKALQQKIHQLEAKMLEHAQNLEFEEAAQIRDQL
HKLRELFIAAS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagcgttcaaactgaattcagcatttaagccttctggcgaccagccagaagca
atccatcgcctgaaagacgggcttgaaaacggactggcgcaccagacgctgctgggcgta
acggggtcgggtaaaaccttcacggtggcaaacgttattgccgaccttcagcgtccgacg
atggtgctggcaccgaataaaacgctggcagcgcagctttatggcgagatgaaagagttt
ttcccggacaacgcggttgagtttttcgtctcctactacgactactaccagccagaggcc
tatgtcccaagctcggacactttcattgaaaaagacgcctcggtaaacgagcacattgaa
cagatgcgtctgtcggcgacgaaggcactgcttgaacgcagagacgttatcgtggtggcc
tccgtgtcggcaatctacggcctgggcgaccctgatttgtacctcaagatgatgcttcac
ctgacgaagggcatgatcatcgaccagcgttcgatcctgcgccgcctgaccgagctgcaa
tacacgcgtaacgatcaggctttccagcgcggcacgttccgcgtgagaggggaggtggtg
gatatcttcccggcagagtcggatgatcttgcgctgcgcgtggagttgttcgacgaagaa
gttgagagactgtcgctgtttgatccgctgaccgggcagatcgatcaaaccattcagcgc
ttcaccatctaccctaagtcgcactacgttacgccgcgtgagcgcattgtgcaggcgatg
gaagacatcaaggttgagctggccgagcgccgtaaatttctgctcgccaataataaactg
ctggaagaacagcgtattgcccagcgtacccagtttgatctcgagatgatgaacgaactg
ggctattgctcgggtatcgaaaactattctcggtatctttcagggcgtggtcccggcgag
ccaccgccaaccctttttgactaccttccggccgatggcctgctggtggtggatgaatcc
cacgtcaccattccgcaaattggcgggatgtaccgaggagaccgtgcgcgtaaagagacg
ctggtggaatatggcttccgccttccgtccgcgctggataaccgcccgctaaaattcgaa
gagtttgaagcgctggccccgcaaactatctacgtttccgccacgccgggtaactacgag
cttgagaaatccggcgaggacatcgttgaccaggttgtacgtcctaccgggctgctcgat
ccgctgattgaggtgcgtcccgtgggcactcaggtggatgatttgctctcggaaattcgc
aagcgcgtggccgttaacgaacgcgtgctggtgacaacgttgacgaaacgtatggcggaa
gacctgaccgaatacctcgaagagcacggcgagcgtgtccgttatctgcactcggatatc
gacaccgtagaacgtatggagatcatccgcgatttgcgcctgggtgagtttgacgtgctg
gtagggataaaccttctgcgagaaggtctggatatgccggaagtgtcgctggtggcgatt
ctcgatgcggacaaagaaggcttcctgcgctccgagcgttcgcttatccagaccatcggt
cgcgcggcgcgtaacattaacggcaaagcgattctctacggcgacaaaattaccccgtcg
atggcgaaggcgattggcgaaaccgagcgccgccgcgagaagcagcagcgttacaacgaa
gagaacggtattacgccacaggggcttaataagcgagtggtagacgtcctgcagcttggc
gaaggcatggcgaagaccaaagggcgggctaaaaccaaagcgcgtagcgtgattgaagat
gatgaaatcgtgatgacgccgaaagcgctgcagcagaaaatacaccagcttgaagcgaag
atgctggaacacgcacagaatcttgagtttgaagaagcggcgcagattcgcgaccagctt
cacaagctgcgcgaactgtttatcgccgcttcgtaa
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