Cobetia sp. 4B: H2O77_04275
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Entry
H2O77_04275 CDS
T09692
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cobb
Cobetia sp. 4B
Pathway
cobb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cobb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H2O77_04275 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobb03400
]
H2O77_04275 (mfd)
Enzymes [BR:
cobb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H2O77_04275 (mfd)
DNA repair and recombination proteins [BR:
cobb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H2O77_04275 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_22
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QWN37697
LinkDB
All DBs
Position
complement(1005641..1009168)
Genome browser
AA seq
1175 aa
AA seq
DB search
MFETPLTPPLPRSRRETTFWMLNDPSAAALALARLADADEAPLMVITPDTASAQRLEADL
RFYTRHPERLLPFPDWETLPYDSFSPHQDIVSERLRTLRTLQTSRRAIVPVPVNTLMQRL
APVDYIAGQVFSLAKGDILNREDFRSRLSRAGYRAVETVYEPGEYALRGALIDLFPMGSE
QPLRIDLFDDEIDTLRAFDPDTQRSGDKVEAIEILPAHEYPLTRGAIACFREGFETLFDV
DPRQCILYNDAIKGIPSPGLEQYLPLFFDETATLFDHMGDELRIAMLPGVREAAESHWDA
ITTRYANLGVDPTRPLLPPHRAFVPVNELLGLIKQHERIELVREPNAHAIEFGHQTLPSL
AIDARSADPTQALASFLKQRLNGEHAQRVLFVAETQGRREVVEEQLTPLLRGFGLRSLDD
FASFEHFVDSPAAVGLTVGGLTHGTWVASAQAEDALSSDDSDSHKGLVVITETELYGEVV
RQSRRQARATDDNELAVRHLSELREGAPVVHHTHGVGRYLGLETINAGGQEAEFLALEYA
DGAKLYVPVDSLHLISRYSGASDELAPLHKLGSEQWEKAKRKAAEKIRDTAAELLDVYAR
REARVGHACDFPAEDYARFAASFPFEETPDQAQTIGAVIQDMCAPQPMDRVVCGDVGFGK
TEVAMRAAFLAVNSGRQVVVLVPTTLLAQQHYDNFRDRFADTAVEIALLSRFTSGKGQEA
SLERIRNGQADIVIGTHKLLSKSLELPNMGLLIIDEEHRFGVSQKERLKSLRAEIDILTL
TATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQRNDGVVKEAILRELLRGGQVYV
LHNEVKTIEESAARIAELVPEANVGVAHGQLPERSLERRMSDFYHKRFNVLVCSTIIETG
IDIPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTRDAVKRLEAIS
ESQDLGAGFTLASHDMEIRGAGELLGDEQSGQMETIGYSLYMEMLDRAVKAIKAGKTPNI
ESPLDEGVEVSLNLPALIPADYLHDVQQRLMMYKRISNAENASDLRELQVEMIDRFGLLP
EPVKTLFRQTQLRQRAQALGIIKLEAGAGRGRIIFGAQTPVDPLTLVNLIQRQSDVYKLE
GADTLRFATDMDDAEARFSFCETLLDLLNAKTKAA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgttcgagactccgctgacgcccccgttgccgcgctcgcgccgcgaaaccaccttctgg
atgctcaatgaccccagcgccgcggcgctggcgctggcgcgcctggccgatgccgatgaa
gcgccgctgatggtcatcaccccggacaccgccagcgcccagcgcctggaagccgacctg
cgcttctatacgcgccatcccgagcgcctgctgcccttccccgattgggaaacgctgccc
tacgacagcttctcgccgcaccaggacatcgtctcggagcgtctgcgcaccctgcgcacc
ctgcagaccagccgccgcgccatcgtgccggtgccggtcaacaccctgatgcagcgcctc
gcgccggtggattacatcgcaggccaggtcttcagtctcgccaagggcgacatactcaat
cgcgaagacttccgctcacgcctgtcgcgagccggttaccgcgcggtggagacggtctac
gagccgggcgaatacgctctgcgcggcgcattgatcgacctgttccccatgggcagcgag
cagccgctgcgcatcgacctgttcgatgacgagatcgacaccctgcgtgccttcgaccct
gacacccagcgcagtggcgacaaggtcgaggcgatcgagattctgcccgcacatgaatac
ccgctgacgcgtggcgccatcgcctgcttccgcgagggcttcgagacgctgttcgatgtc
gacccgcgccagtgcattctctacaacgacgccatcaagggcattccctcgccggggctc
gagcagtacctgccgctgttcttcgacgagaccgcgacgctctttgatcatatgggcgac
gagctgcgcatcgccatgctgcccggcgtgcgcgaagcggccgagagccactgggacgcc
atcaccacccgctacgccaatctgggcgtcgacccgacacgcccgctgctgccaccacac
cgcgccttcgtgccggtcaatgagctgctgggcctgatcaaacagcatgagcgcatcgag
ctggtacgtgagcccaatgcccacgccatcgaattcggccatcagacgctgccgagcctg
gccatcgatgcgcgcagcgccgacccgacccaggccctggccagcttcctcaagcagcgc
ctgaacggcgaacatgcccagcgtgtgctgttcgtcgccgagacccagggccgccgcgaa
gtcgtcgaggagcagctcaccccgctgctgcgcggcttcgggctgcgcagcctggatgac
ttcgcaagcttcgagcacttcgtggatagcccagccgccgtcggcctgaccgtcggtggc
ctgacgcatggcacctgggtggccagcgcacaggcagaagatgccctgtccagcgatgac
agcgacagccacaaggggctggtggtcatcaccgagaccgagctctacggcgaagtggta
cgtcagagccgccgccaggcgcgcgccaccgatgacaacgagctggccgtgcgccacctc
tcggagttgcgtgaaggcgcgccggtggtgcaccacacccacggcgtcggccgctatctg
gggctggagaccatcaacgccggggggcaggaggccgagttcctcgcgctcgaatacgcc
gatggcgccaagctctacgtgccggtggacagcctgcacctgatctcgcgctattccggg
gccagtgacgagctggcgccgctgcacaagctgggctccgagcaatgggagaaggccaag
cgcaaggccgccgagaagatccgcgataccgccgccgagctgctggatgtctatgcacgc
cgcgaggcgcgtgtcggccatgcctgcgacttccccgccgaggactacgcacgcttcgcg
gccagcttccccttcgaggaaaccccggaccaggcgcagaccatcggcgcggtgatccag
gacatgtgcgcgccccagccgatggaccgcgtggtatgtggcgatgtcggcttcggcaag
acggaagtcgcgatgcgcgccgccttcctcgccgtcaactccggccgtcaggtggtggtg
ctggtgcccaccaccctgctcgcccagcagcactacgacaacttccgcgatcgcttcgcc
gacaccgcggtggagatcgccctgctgtcgcgcttcaccagcggcaagggccaggaagcc
tcgctcgagcgcatcaggaacggccaggccgatatcgtgatcggcactcacaagctgctc
tccaaatcgctggagctgcccaacatggggctgctgatcatcgatgaggagcaccgcttc
ggcgtctcccagaaggagcgcctcaagagcctgcgcgccgagatcgacatcctgaccctg
accgccacgccgattccgcgcacgctgaacatggcgatgagcggcatccgcgacctgtcc
atcatcgccacgccaccggcgcgccgcctgtcggtgaagaccttcgtccagcagcgcaac
gacggcgtggtcaaggaagccatcctgcgcgagctgctgcgcggcgggcaggtctacgtg
ctgcacaatgaggtcaagaccatcgaggagagcgccgcgcgcatcgcggagctggtgccg
gaggccaatgtcggcgtcgcccacggccagctgccggagcgcagcctggagcggcgcatg
tcggacttctatcacaagcgcttcaacgtgctggtgtgctcgaccatcatcgagaccggc
atcgacatcccgagcgccaacaccatcatcatcgagcgcgccgacaagttcggtctggct
cagctgcaccagctgcgtggccgcgtcgggcgctcgcatcaccaggcctacgcctacctg
ctgaccccgcaccccaaggcgatgacccgcgatgcggtcaagcgcctggaagcgatcagc
gaatcccaggacctcggtgccggcttcacgctggcctcccatgacatggagatccgcggc
gcgggtgagctgttgggtgacgagcagtccggccagatggaaaccatcggctactcgctg
tacatggagatgctcgatcgcgccgtgaaggccatcaaggcgggcaagacgcccaatatc
gagtcgccgctggatgaaggcgtcgaggtcagcctgaatctgccggcactgattccggcc
gattatctgcacgacgttcagcagcgcctgatgatgtacaagcgcatcagcaacgccgag
aacgcaagcgacctgcgcgaactgcaggtcgagatgatcgaccgcttcggcctactgccg
gagccggtcaagacgctgttccgccagacccagctgcgccagcgcgcccaggcgctgggc
atcatcaagctggaggccggcgccggacgtggtcgcatcatcttcggcgcccagacgccg
gtcgatccgctgacgctggtcaacctgatccagcgccagtcggatgtctacaagctggaa
ggtgccgacacgctgcgtttcgccaccgacatggacgacgccgaggcgcgctttagcttc
tgcgagaccttgctggacctgctcaacgccaagaccaaggcggcctga
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