Comamonas odontotermitis: LAD35_15320
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Entry
LAD35_15320 CDS
T07833
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
codo
Comamonas odontotermitis
Pathway
codo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAD35_15320 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
codo03400
]
LAD35_15320 (mfd)
Enzymes [BR:
codo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAD35_15320 (mfd)
DNA repair and recombination proteins [BR:
codo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LAD35_15320 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
UBB16180
LinkDB
All DBs
Position
3314910..3318398
Genome browser
AA seq
1162 aa
AA seq
DB search
MDLPKLTAGKRFQSPMPPGSADALLLARLAEREASGKRVTAIVTADASDAHRLQDEMAFF
APELRTALFPDWETLPYDTFSPHQDLISERLATLWRISQGEADVVLIPATTALYRLAPPS
FLASYTFAFQAGQKLDEAKLKAQLTLAGYNHVSQVVSHGEYSVRGGLIDLFPMGSLVPYR
VDLFDDEIDSIRTFDPDTQRSLYPVKDVRLLPGREFPMDDEARARFRNRWRELLEGDPTK
SRIYKDMGNGVATAGIEYYLPLFFDSTATVFDYLGAHATLVLHGDLEPAFQRFWQDTKDR
YRLVQGDPERPALPPETLFLTADQFYTTARETAQFALRPQVEDVEDAAVFQKLEDLAVVR
GAEDPLAKLQRHIASGKARTLLLAESDGRRESLLDFFRASGLNPPAFDSLAEFQQTTDEK
IGIATAALAKGFRWAEQGIDFVTETELFAATGSARRRRRQEQASDVEALIKDLSELKVGD
PVVHAQHGIGRYHGLINMDVGQKNPDGSPALQEFLHLEYADKAVLYVPVSQLAQISRYTG
VSADEAPLHKLGSGQWEKARRKAAEQVRDTAAELLNIYARRAAREGHAFRYSPQDYEQFA
NDFGFDETADQRAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVAL
LAPTTLLAEQHYQTLVDRFSKWPIKVALVSRFRSGKEVNATIKGLDDGTVDIVVGTHKLL
SEKTQFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALDGLRDLS
VIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILP
EARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPSANTIIISRADKFGLA
QLHQLRGRVGRSYHQAYAYLMVPDMEGLTKQAAQRLEAIQQMEELGSGFYLAMHDLEIRG
AGEVLGDNQSGNMMEIGYQLYNEMLSEAVRSLKNGKEPDLLSPMAATTDINLHAPALLPN
DYCGDVHLRLSFYKKLATAKTADQIDGLLEEIVDRFGKLPAQAQTLIDVHRLRVLCEPFG
VQKVDAAPGVISISFHPNPPIDPMTIIGLIQKNKAIKLAGNDKLRIERALPEVKDRVQMV
RDVVRSLGKPLANTPRTEGATA
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggatctccccaaactcaccgccggcaaacgcttccagtccccgatgccgcccggcagc
gccgacgcattgctgctggcgcgcctggccgaacgcgaagcctcgggcaagcgtgtcacc
gccatcgtcacggccgatgcgagcgacgcgcatcgcctgcaggacgagatggcttttttt
gcgcccgagctgcgcaccgcccttttcccggattgggaaacgctgccgtacgacaccttt
tcgccgcaccaggatctgatcagcgaacgcctggccacgctgtggcgcatcagccagggc
gaggcggacgtggtgctgatccccgccaccacggccctgtaccgcctggcgccgccatcc
ttcctggcaagctataccttcgccttccaggccgggcagaagctcgacgaggccaagctc
aaggcgcagctcacgctggctggctacaaccatgtgtcgcaggtggtcagccatggcgaa
tactccgtgcggggcgggctgatcgatctgtttcccatgggctcgctcgtgccctaccgg
gtcgatctgtttgacgacgagatcgactccatccgcactttcgaccccgatacccaacgc
agcctgtacccggtcaaggacgtgcgcctgctgcctgggcgcgagttccccatggatgac
gaggcgcgtgcgcgctttcgcaaccgctggcgggagctgttggaaggcgacccgaccaag
agccgcatctacaaggacatgggcaacggcgtggccacggccggcatcgaatactacctg
ccgctgttctttgacagcaccgccaccgtgtttgattacctgggggcgcacgccaccttg
gtgctgcatggcgatctggagcccgctttccagcgcttctggcaagacaccaaggaccgc
taccggctggtgcagggtgacccggagcgcccggcgctgccgcctgaaaccctgttcctg
accgcagaccagttctacaccaccgccagggaaacagcccagtttgcgctgcgcccgcag
gtggaggatgtggaggacgcagccgttttccagaaactggaagacctggccgtggtgcgc
ggcgccgaagacccgcttgccaaactgcagcggcacattgcatccggcaaggcacgcacg
ctgctcttggcggaaagcgatggcaggcgcgagagcctgctcgatttcttccgtgcgagc
ggcctgaacccgccagcctttgattcgctggccgagttccagcagaccacggacgagaaa
atcggcatcgccactgctgcgcttgccaagggctttcgctgggccgagcaagggatcgac
ttcgtcaccgagaccgaactgttcgccgccaccggcagcgcacgccgccgccgcaggcag
gaacaggccagcgatgtcgaggcgctgatcaaggacctgtcggagctcaaggtcggcgac
ccggtggtccatgcccagcacggcattggccgctaccatggcctcatcaacatggatgtg
ggccagaagaaccccgacggctcgcccgcgctgcaggagtttctgcacctcgaatacgca
gacaaggcggtgctgtatgtaccggtaagccagctcgcgcagatcagccgctacaccgga
gtatcggcagacgaagctccattgcacaaactgggcagcggccagtgggaaaaagcccgg
cgcaaggccgcagaacaggtgcgcgacacggccgccgagctgctcaacatctacgcccgc
cgcgccgcgcgcgagggccacgccttccgctatagcccgcaggactatgagcagttcgcc
aacgacttcggctttgatgaaaccgccgaccagcgcgctgccatccacgcggtgattcag
gacatgatctcgccccgccccatggaccggctggtgtgcggcgatgtgggctttggcaag
accgaggttgcgctgcgcgcagcctttgtcgcagtgaccggcggcaagcaggtcgcactg
ttggcgcccaccaccttgctggccgagcagcactaccagacgctggtagaccgtttttcc
aagtggccgatcaaggtggcgctggtgtcgcgcttccgctcaggcaaggaagtcaatgcc
accatcaaagggctggatgacggcacggtcgacatcgtggtgggtacgcacaagctcctg
tcggagaagacccagttcaagaacctgggcctgctcatcatcgacgaagagcatcgtttc
ggcgtgcgccacaaggaagccatgaaggccatgcgcgccgaggtggacgtgctcacgctt
accgccacccccattccgcgcaccatgggcatggcgctcgacgggctgcgcgatctgtcc
gtcattgccacggcgccgcagcggcgcctggccatcaagacctttgtgcgcaacgaaggc
accggtgtcatccgcgaagccgtgctgcgcgaattgaagcgcggcggccaggtctacttt
ctgcacaacgaggtcgagaccatcgagaaccggcgccagaagctggaagaaattctgccc
gaagcacgcatcgccgtggcccacggccagatgcccgagcgcgagctcgaacgcgtgatg
cgcgacttcgtcgcccagcgctacaacatcctgctgtgctcgaccatcatcgagaccggc
atcgacgtgcccagcgccaacaccatcatcatcagccgtgccgacaagtttggcctggcc
cagttgcaccagttgcgtggccgcgtaggccgcagctatcaccaggcctacgcctacctg
atggtgccggacatggaaggcctgaccaagcaggcggcgcagcggctcgaagccattcag
cagatggaagaactgggcagcggcttctacctcgccatgcacgacctggaaatccggggc
gcgggcgaagtgctgggcgacaaccagagcggcaacatgatggagatcggctaccagctg
tacaacgagatgctgtccgaagccgtgcgcagcctgaaaaacggcaaggagcccgatctg
ctctcgccgatggcggccaccaccgacatcaacctgcacgccccggccctgctgcccaac
gactactgcggcgatgtgcacctgcgcctgtcgttctacaagaagctggcaaccgccaag
acggccgaccagatcgacggcctgctcgaagaaatcgtcgaccgcttcggcaagctgccg
gcgcaggcgcagacgctcatcgacgtacaccgcctgcgggtgctgtgcgagccgtttggc
gtgcagaaggtcgatgcggcgccgggtgtgatcagcatcagcttccaccccaacccgccc
atcgacccgatgaccatcatcggcctgatccagaagaacaaggccatcaagctggctggc
aacgacaagctgcgcatcgaacgcgccctgcccgaggtaaaggaccgcgtgcagatggtg
cgcgatgtggtgcgcagccttggcaagccgctggcaaacacccccaggaccgaaggtgca
acggcgtag
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