Colwellia sp. Arc7-D: DBO93_06915
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Entry
DBO93_06915 CDS
T05422
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cola
Colwellia sp. Arc7-D
Pathway
cola03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DBO93_06915 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cola03400
]
DBO93_06915 (recD)
Enzymes [BR:
cola01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DBO93_06915 (recD)
DNA repair and recombination proteins [BR:
cola03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DBO93_06915 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
UvrD-helicase
SH3_13
UvrD_C
Helicase_RecD
SLFN-g3_helicase
AAA_22
Head_binding
RecD_N
AAA_16
AAA_24
DEAD
ResIII
PhoH
nSTAND3
FtsK_SpoIIIE
DUF87
AAA
Motif
Other DBs
NCBI-ProteinID:
AWB57304
UniProt:
A0A2S0UZC0
LinkDB
All DBs
Position
1603654..1605735
Genome browser
AA seq
693 aa
AA seq
DB search
MSEPVINIESKVTHQSETIYASFQHANRQLDGLVAVDYFFAKEINQCLIFKPDSTSLLEL
NQEIKQRQWFHLLIALSASLRDGHSCLPLAQVAGKRLFTAGMNESNSETKGFLFSDLNTL
TALVAELLLTDPNNENAFEQPIVCSHERLYLRRYYQFEQELKQVVRQRRIIKSASDAPSN
NSIEALDEVGNIKSIIGSLFPDLAQLNDVQPSEIDWQAVAVANAINKDFAIIAGGPGTGK
TYTVTKLLAALLMLARTKSNNSDSFTIPNISLVAPTGKAAQRLSESITSAVKAFRGSIDD
KILDLIPEQAKTLHRLLGVIPDQVNFRHHQENQLNIDILLIDEVSMVDLPMMTRIFRALP
TKTKVILLGDADQLPSVAVGSVLADFAPRPHLGYSAVNHQYLAQVTGYNSLTKVETAEAN
NSQYSAADCVTFLLKSRRFDGEGGIGRIANFVINGQYQESWQLLKQNETQDNASPNQGLS
KDKQLTLLSGSIETWLAPLVEQYYLGLFQCKKVEEAFALLAKFRILSSTRKGPQGVESLN
ALVIDILRNKGAIPFNRFESNTHLYAAQPIMINENDYRLGVYNGDIGVLWRNTQGHLMAV
FENAKGGLDWILPSRLPKFETVYAMTIHKTQGSEFDHVAMVLPEQKDNRLLSRELLYTGI
TRAKKHLSIASSQSVWQSGVSQQVNRHSGLAID
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacctgtaattaacatcgaaagcaaagttactcaccaatcagaaactatttat
gcatcgtttcaacatgctaatcgtcaattagatgggttagttgccgtagattattttttc
gcgaaagaaattaaccagtgtctgatttttaaacctgatagcacttcattactagaactg
aaccaagaaattaagcaacggcaatggtttcacttattaattgccttaagtgcaagctta
cgagacggtcatagttgcttgccgcttgcgcaagtggcgggaaaacgcttatttactgcc
ggtatgaatgaaagtaactcagaaactaagggcttcttattttctgatttaaatacgctc
accgcactggtggctgaattactgttgactgatccaaataatgaaaatgcatttgaacaa
cccatagtatgtagtcatgaacggttgtatttgcgccgttattatcaatttgaacaagaa
ttaaaacaagtagttcgccaacgtcgaatcataaaaagtgcatcagacgcaccttcaaat
aatagcattgaggcacttgatgaagttggcaatattaaaagcatcatcggaagtttgttt
ccagatttagcacaactaaacgatgttcaacctagcgaaattgattggcaagccgttgct
gttgccaatgccattaacaaagactttgctattattgctggtggcccaggtacaggaaaa
acctatacagttaccaagttacttgccgcactgttgatgcttgctcgcaccaaaagtaac
aatagcgatagctttactattccaaatatttctttagttgcgcctaccggtaaagccgca
caacgattatctgaatcaattaccagtgcagttaaagcgtttcgcggcagtattgatgac
aaaatattagacctaattccagagcaagcaaaaacccttcatagactattgggggttatt
cccgatcaggtaaactttcgtcatcatcaagagaatcaactcaacattgatattctattg
attgatgaagtctctatggttgatttacctatgatgacacgaatttttcgcgccttgccg
actaaaactaaggttattttattgggtgatgccgaccaattaccctcagttgctgttggc
agtgttttagccgattttgcgccgcgtcctcacctaggttatagcgccgtaaatcaccaa
tatttagcgcaagtaacgggttataactcgctcactaaagttgaaacagctgaagctaat
aacagccagtacagtgctgccgactgtgtaacatttctcctaaaaagtcgccgtttcgat
ggtgagggtggcataggcagaattgcgaattttgtcattaatggtcaataccaagaaagt
tggcagctattaaagcaaaatgaaacacaagataatgcgtcgccaaaccaaggccttagc
aaagacaaacagttaacattattatcaggcagcattgaaacctggttagctccccttgtt
gaacaatattacttgggcctgtttcaatgtaaaaaggttgaagaggctttcgcgttattg
gcaaaatttagaattttatcgtcaactcgcaaaggcccgcaaggtgttgaaagtctgaat
gctttagtgattgatattttacgtaataaaggtgctattccatttaaccgctttgaatca
aatactcatttatatgctgcgcagccgatcatgatcaacgaaaatgactatcgcttaggc
gtttataatggcgatattggcgtactttggcgtaatacccaagggcatttaatggcggta
tttgagaatgcaaagggtgggttagattggattttaccctcgcgtttgcctaagtttgaa
acggtatacgcgatgactattcataaaacccaaggcagtgagtttgaccatgttgcaatg
gtgctgccagagcaaaaagacaatagattattgtcgcgcgaattattatatactggcatt
actcgagcgaaaaaacatttaagcatcgccagtagccaaagtgtttggcaaagtggcgtg
agccaacaagtaaatagacattctgggttggcgattgactag
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