Colwellia sp. Arc7-D: DBO93_13755
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Entry
DBO93_13755 CDS
T05422
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cola
Colwellia sp. Arc7-D
Pathway
cola03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DBO93_13755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cola03400
]
DBO93_13755
Enzymes [BR:
cola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DBO93_13755
DNA repair and recombination proteins [BR:
cola03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DBO93_13755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWB58513
UniProt:
A0A2S0V2T1
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All DBs
Position
3169065..3172574
Genome browser
AA seq
1169 aa
AA seq
DB search
MSKNVSLFNPVLAKSRGKSADKKVWQNLPGSSATVAIFHGALSTQQPILLLTHDTPSALR
LEQELASLNRQAKLPICLFPDWETLPYDTFSPHQDIISQRLATLYQLSRMDKGIVIVPIS
TLIQRLAPKQYIEANSLIIKKGDKKDLHQLRQSLEASGYRCVEQVMEHGEFSARGAILDI
FPMGSNTPFRLDFFDDEIDEIRLFDPENQRSSDKVDGINLLPAHEFPTDTDGTNLFRSQY
REQFTSTIDKESIYHQVSNGIMPAGIEYYLPLFFEQTNTLCDYLAENTLVIISGDIDKSL
SHYWTDINYRYEDRRYDPTRPLLPPEQLFLNSEELYSALKPFDRINLKPEINEEEVKASQ
IQFDVHSLPDLTIDHKLKQPFELLNGFIASKETPNKLLFVAESQGRRESVLELLERNKIK
PNIFSTIEEFVNSDAPLGITVNALSAGFIFQAKGSAKKNTIALITEAELLGDRVRQTRRR
NKQQEIQNDAIFKNLAELSIGQPVVHIDHGIGRYMGLQTIENSGITTEFLVLSYAKEAKL
YVPVASLHLISRYSGADAEHAPLHKLGNDTWSKAKQKAAEKVRDVAAELLDIYAKRASNH
GYSFKRDKDDYRAFADSFGFEETFDQEQAINAVISDMLSPKAMDRLVCGDVGFGKTEVAM
RAAFVAVNDGKQVAILVPTTLLAQQHYESFRDRFANWPISIEVLSRFKTTKEQNVVIKDV
ESGQIDILIGTHKLLQNSIKYKDLGLLVVDEEHRFGVKQKEKIKQLRANVDILTLTATPI
PRTLNMAMGGMRDLSIIATPPAKRLAVKTFVRQRDDALIRESILREVLRGGQVYFLHNNV
DTIDKTAADIQILLPEAKIITAHGQMRERELERVMSDFYHQRYNVLVCTTIIETGIDIPS
ANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHEKSMTKDAKKRLEAIASLEDL
GAGFTLATHDLEIRGAGELLGEDQSGSMSQVGFTLYMEMLDAAVAALKDGKSLSLDQVTK
TQTEVDLRVPALLPDDYIFDVSLRLSLYKRIASCKNKQALDDVQVELIDRFGLLPQAAKN
LVHIAKLKLKAEKIGITRIDAGPAGGSIEFSVDTKVDHMFIFGLIQQQPKIYKMDGNNKL
KFALVSEDAKSRFILITTMLNELANHLRA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaatgttagtcttttcaatccagtattagctaaaagtcgtggaaaaagtgcc
gataaaaaagtttggcaaaatctaccgggtagtagtgccactgttgctatatttcatggc
gctttatcaacacagcaacctatacttctattaactcatgacactccttctgcactgcgt
ttagagcaagaacttgccagtttaaatcgacaagccaagctacctatatgcttatttcct
gactgggagacattaccctatgatactttttcaccgcatcaagatattatttctcaacgt
ttagcgactttatatcaattatcacgcatggataaaggtattgttattgtgcctatttcc
accttaatacaacgattagcgcccaagcaatatattgaagcgaatagtttaatcatcaaa
aaaggtgataaaaaagatttacatcagctaaggcaaagcttagaagctagtggttaccga
tgcgttgaacaagtaatggagcacggtgagttctctgcccgtggcgctattctcgatata
tttccgatgggcagtaacacgccattcaggttagatttttttgatgacgaaattgacgaa
attcgtttattcgacccagaaaaccagcgatctagcgataaagttgatggtataaactta
ttacccgcacatgaatttccaaccgacacggatggtactaatttgtttcgcagccaatat
cgcgaacaatttaccagtaccatagataaagaatctatttatcatcaagttagtaatggt
attatgccagcgggcatcgaatattatttaccgttattttttgagcaaaccaacacctta
tgtgattatctcgccgaaaacaccttggttattatcagtggcgatattgacaaatctctg
agccattattggaccgatattaattatcgttatgaagatcgccgttatgatccaacccga
ccattattgccgcctgaacagctctttttaaacagtgaagaactctacagtgctttaaaa
ccctttgatcgcatcaacttaaagcctgagattaatgaagaagaagtaaaagcatctcaa
atacagtttgatgttcattcactacctgacttaaccatagatcataaattaaaacagcct
tttgaactgcttaatggctttatcgccagcaaagaaaccccgaataaactgctatttgtc
gcggaaagccaaggtcgacgtgaaagtgttttagagttactagagcgaaataaaataaag
ccaaatatctttagtacgattgaagaatttgttaacagtgatgcgccattgggtataact
gtgaacgctttaagtgctggttttatttttcaagctaaaggcagtgcgaaaaaaaatacc
atcgctttaatcacagaagctgagttacttggcgatcgtgtacgccaaactcgtcgtcga
aacaaacaacaagaaattcaaaacgacgccatatttaaaaacttggctgagcttagtatt
gggcaaccggtggttcatattgaccacggtattggccgctatatgggattacaaaccata
gaaaatagcggcattactacagaatttttagtactaagttacgccaaagaagccaaatta
tatgtccctgttgcttcactgcatttaattagtcgctactcgggcgcagacgccgaacac
gcacctttgcataaattgggtaacgacacttggagcaaagccaaacaaaaagcggctgaa
aaagtacgtgatgttgccgctgaattgttagatatttacgctaaacgcgctagtaatcat
ggctacagcttcaaacgtgataaagatgattatcgcgcctttgctgatagttttggcttt
gaagaaacctttgatcaagaacaagccatcaatgctgtgatcagcgacatgttatcgcca
aaagcaatggacagattagtttgtggtgatgtgggctttggtaaaaccgaagtggcaatg
cgcgcagcatttgttgccgtaaatgacggtaaacaagtggcgatattagtgccaactacc
ctgctcgctcagcaacattacgaaagtttccgtgatcggttcgctaattggccaattagc
atagaagtgttatcgcgctttaaaaccaccaaagaacaaaatgtggtgatcaaagacgtt
gaatctggccaaatcgatatcttaattggcacccataaacttttgcaaaacagcatcaaa
tataaagacttaggcttactagttgttgatgaagaacatagatttggggttaaacaaaaa
gaaaagataaaacaactgcgtgcaaacgtcgatattttaaccttaaccgcaacacctatt
ccgcgtacgttaaacatggcaatgggcggtatgcgcgacttatccattatagcgacacca
ccagccaaacgcttagcggtaaaaacctttgttcgacaacgcgacgacgccttaattcgc
gagtcaatactgcgtgaagttttacgtggtggacaggtttatttcttacataacaatgtc
gacactatagataaaacagctgccgacatacaaatactgctacccgaagcaaaaataata
accgcccatggacaaatgcgcgaacgcgaacttgaacgtgtcatgagcgacttttaccac
caacgatataacgttttagtttgtaccacgattatagaaaccggtattgatattccgagt
gctaacacgatcattatggatcgtgctgatcatctcggtttagcacaattgcatcaatta
cgcggacgcgttggtcgctcacaccatcaagcttatgcttatttattaacgccacatgaa
aaaagcatgactaaagatgcgaaaaaacgccttgaagctatcgcatcattagaagactta
ggtgctggctttacgttagctacccacgatttagaaattcgtggcgcgggtgagttactt
ggcgaagatcaaagtggctctatgagccaagttggctttactctttatatggaaatgctt
gatgccgcggttgctgcgctaaaagacggtaagtcattatcacttgaccaagtcactaaa
acacaaactgaagtagacttgcgtgttcctgctctactgccagatgactacatattcgat
gttagcttaagactaagcttgtataaacgaattgccagttgcaaaaacaagcaagcactt
gacgatgtacaagttgaacttattgaccgttttggcctattacctcaggcagcgaaaaac
ttagtgcatatcgctaaattgaaactgaaagctgaaaaaattggtattacacgcattgat
gcagggcctgcaggaggatcaattgaatttagtgttgataccaaagtcgatcatatgttc
atttttggtttaattcagcaacaaccgaaaatctataaaatggatggcaataacaaactt
aagtttgcactggtgagcgaagatgctaaatcgcgctttattttaatcacgactatgctg
aacgaattggcgaatcacttacgtgcttaa
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