Colwellia sp. PAMC 21821: A3Q33_13335
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Entry
A3Q33_13335 CDS
T04816
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
colw
Colwellia sp. PAMC 21821
Pathway
colw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
colw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A3Q33_13335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
colw03400
]
A3Q33_13335
Enzymes [BR:
colw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A3Q33_13335
DNA repair and recombination proteins [BR:
colw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A3Q33_13335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ARD45200
LinkDB
All DBs
Position
complement(3144040..3147549)
Genome browser
AA seq
1169 aa
AA seq
DB search
MSKNVSLFSPVLAKSRGKSADKKVWQNLPGSSATVAIFHGALSTQQPILLLTHDTPSALR
LEQELASLNRQAKLPICLFPDWETLPYDTFSPHQDIISQRLATLYQLSRMDKGIVIVPIS
TLIQRLAPKQYIEANSLIIQKGDKKDLHQLRQNLEASGYRCVDQVMEHGEFSARGAILDI
FPMGSNTPFRLDFFDDEIDEIRLFDPENQRSSDKVDGINLLPAHEFPTDTDGTNLFRSQY
REQFTSTIDKESIYHQVSNGIMPAGIEYYLPLFFEQTNTLCDYLADNTLVIISGDIDKAL
THYWTDIDYRYEDRRYDPTRPLLPPSHLFLNSEELYSALKPFDRINLKPDVNEDEVKASQ
VQFDVHALPDLTIDHKLKQPFELLNNFVTSKETPNKLLFVAESQGRRESVLELLERNKIK
PNVFNTIEDFVNSDAPLGITVNALSAGFIFQAKGSAKKNAIALITEAELLGDRVRQTRRR
NKQQEIQNDAIFKNLAELSIGQPVVHIDHGIGRYMGLQTIENSGITTEFLVLSYAKEAKL
YVPVASLHLISRYSGADAEHAPLHKLGNDTWSKAKQKAAEKVRDVAAELLDIYAKRASNH
GYSFKRDKDEYRAFADSFGFEETFDQEQAINAVISDMLSPKAMDRLVCGDVGFGKTEVAM
RAAFVAVNDGKQVAILVPTTLLAQQHYESFRDRFANWPVTIEVLSRFKTTKEQNAVIKEV
ESGQIDILIGTHKLLQNSIKYKDLGLLVVDEEHRFGVKQKEKIKQLRANVDILTLTATPI
PRTLNMAMGGMRDLSIIATPPAKRLAVKTFVRERDDALIRESILREVLRGGQVYFLHNNV
DTIDKTAADIQLLLPEAKIITAHGQMRERELERVMGDFYHQRYNVLVCTTIIETGIDVPT
ANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHEKRMTKDAKKRLEAIASLEDL
GAGFTLATHDLEIRGAGELLGEDQSGSMSQVGFTLYMEMLDAAVAALKDGKELSLDQVTK
TQTEVDLRVAALLPDDYIFDVSLRLSLYKRIASCKNKQALDDVQVELIDRFGLLPQAAKN
LIHIAKLKLKAEKIGITRIDAGPAGGSFEFSVDTKVDHMFIFGLIQQQPKIYKMDGANKL
KFKQATEDAKSRFILITTMLNELAKHLRP
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaatgttagtcttttcagtccagtattagctaaaagtcgcggtaaaagtgcc
gataaaaaagtttggcaaaatctacctggcagtagcgcaacggtcgctattttccatggc
gcgttatccacacaacagcccatactactgctgactcatgacacgccatcagcgttgcgt
ttagagcaagaacttgccagtttaaatcgacaagcaaaattaccgatttgcttatttcct
gattgggaaaccttaccgtacgatacattttcgccacaccaagatattatttctcagcga
ttagccactttatatcaattatcgcgcatggataaaggcattgttatagtgcctatttcc
accttaatacaacgtttagcacccaagcaatatattgaagctaatagcttaatcatccaa
aaaggcgataaaaaagatttacatcagctaagacaaaacttagaagctagcggttatcgt
tgtgttgatcaagtgatggagcacggtgagttttctgcccgcggtgccatacttgatata
tttcctatgggcagcaacaccccgttcagattagacttttttgatgacgaaattgacgaa
attcgtttgtttgacccagagaaccaacgttcgagtgataaagttgatggcattaattta
ttacccgcgcatgaatttccaaccgatactgacggtaccaatttatttcgtagccaatac
cgcgaacaatttaccagcacgatagataaagaatctatttatcaccaagtcagtaacggc
attatgccggcaggcatcgagtattatttaccgttattttttgagcaaaccaatacctta
tgtgactatctagctgataacactttggtgattatcagtggcgatattgataaagcttta
acacattactggaccgatattgactaccgctatgaagatagacgctacgaccctactcga
ccattattaccgcctagccacctatttctaaatagtgaagaactttacagcgcattaaaa
ccttttgaccgtatcaatttaaaacctgacgttaatgaagatgaagtaaaagcatcacaa
gtgcagtttgacgtgcatgcactgcctgatctgaccatagatcataaattaaagcagcct
tttgaattacttaataactttgttactagcaaagaaacgccaaataagctgttatttgtg
gcagaaagccaaggtcgacgtgaaagtgtattagagttattagagcgcaataaaataaag
cctaatgtctttaatactattgaagattttgttaacagtgacgcgccgctcggtatcacg
gttaacgctttaagtgccggttttatttttcaagccaaaggcagtgctaaaaagaatgcc
atagcgttaattacagaagcagaattactcggcgatcgggtacgccaaactcgtcgtcgc
aataaacaacaagaaattcaaaacgacgcaatctttaaaaacttagcagagctaagtatc
ggccaaccggttgttcatattgaccatggcattggtcgttatatgggtttacagacgata
gaaaacagcggtattactactgaatttttagtactcagttacgctaaagaagccaaacta
tatgtgcccgttgcctctctgcatttaattagtcgctactcaggcgcagacgctgaacac
gctcctttacataagttgggtaacgacacctggagtaaagccaaacaaaaagcggcagaa
aaagtacgcgacgtcgctgctgaactgttagatatttatgccaaacgtgctagtaaccat
ggttatagctttaaacgtgataaagatgaatatcgtgcctttgctgatagttttggtttt
gaagaaacctttgatcaagagcaagctattaatgcggtgatcagcgatatgctttcacca
aaagcgatggaccgattagtttgtggtgacgttggctttggtaaaaccgaagtcgcaatg
cgagcagcctttgtcgcggtaaatgacggtaagcaagtagcgatattagtaccaacgacc
ttactcgctcaacaacattacgaaagtttccgtgatcgtttcgccaactggcccgttacc
attgaagtgctatcacgctttaaaaccaccaaagagcaaaatgccgttattaaagaagtg
gagtctggccaaatagacattttaattggcactcataaacttttacaaaacagcattaaa
tataaagatttaggacttttagtcgttgatgaagaacatagatttggtgttaaacaaaaa
gaaaaaataaaacagttacgtgccaatgtcgatattttaaccctaaccgcaaccccgatc
cctcgcaccttaaatatggcgatgggtggcatgcgtgacttatcaataatagcgacgcca
ccagcaaaacgcttagcggtaaaaacttttgttagagagcgtgatgacgctttaatccgt
gaatcaattttgcgtgaagtgttacgtggtggccaagtttatttcttacacaataatgtc
gacaccatagacaaaactgccgcagatatacaactattattgccggaagcgaaaattatt
actgcccatggtcaaatgcgagagcgtgaacttgagcgtgtaatgggcgacttttatcac
caacgttataacgtgttagtttgtactaccattattgaaaccggcattgatgtacctacc
gctaacaccattattatggaccgagcagaccatttaggtttagcgcaattgcatcaatta
cgtggccgtgtgggtcgttcgcatcaccaagcttatgcttatttattaacaccgcacgaa
aaacgcatgaccaaagatgcgaaaaagcgtcttgaagccatcgcatcccttgaagattta
ggcgccggctttaccttagccactcacgatttagagattcgtggcgcaggtgaattatta
ggcgaagatcaaagtggttcaatgagccaggtcggctttacgctttatatggaaatgctt
gatgccgcggttgctgcgcttaaagacggtaaagagttgtcgcttgaccaagtcaccaaa
acgcaaacggaagtagacttgcgcgtagcagcactgctgccagatgactatatttttgat
gtcagtttacgtttaagcctttataaacgtattgccagttgtaaaaataagcaagcactt
gacgatgtgcaagttgagctgattgatcgttttggcttgttaccccaagcggcaaagaat
ttaattcatattgctaagctaaagcttaaagcagagaaaataggcattactcgcattgat
gctggacctgctggtggttcatttgagttcagtgtcgatactaaagtagaccatatgttt
atctttgggttaattcagcagcaaccaaaaatatacaaaatggacggagcgaataagctc
aaatttaaacaagcaaccgaagatgctaagtctcgatttattttgatcaccaccatgcta
aacgaattggcgaaacatttgcgcccgtaa
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