Chryseobacterium oranimense: N0B40_14200
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Entry
N0B40_14200 CDS
T08904
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cora
Chryseobacterium oranimense
Pathway
cora03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cora00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N0B40_14200 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cora03400
]
N0B40_14200 (mfd)
Enzymes [BR:
cora01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N0B40_14200 (mfd)
DNA repair and recombination proteins [BR:
cora03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N0B40_14200 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Choline_kin_N
Latarcin
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
UWX59559
LinkDB
All DBs
Position
complement(3051412..3054780)
Genome browser
AA seq
1122 aa
AA seq
DB search
MQLKPIHEKFLPDLLQKEFGKEIFTQLEKSKHISVKGSAGSSVSIFVAELFLTQKKTVLF
LVDDKEDALYANTEMEDLLGKDKVLYFPATHLEPYQVEKTQNANLVLRTEVLNKINSGKA
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYNFQQADFVSEPGEF
SVRGGIVDVFSYSNEKPYRITFFGNEVENIKTFDIETQLSIDKVKDFQLVSNMNFSVTGT
RVSLLQLLPEESFVVSRNGAVGMQKIRTFYEKSLEKYDTLNKDIAHRTPQELFISDQDFL
FDFKKFKTIDFAGTPIEGLKEITEIKVEQLPQPSFHKNFELLIEDIEEKQAEGFDTWISF
STEKQKERLESIFEELEHELPFKSFKSELHEGFVDNGHKILVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPDGKEIVLSKLGSPAWKSLKQKTKAKVKQIAFDLIRLYAERKTAKGFS
YTPDSYLQNELEASFIYEDTPDQEKATIDVKRDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVSYVNRFRTAKQKAEALDGLKNG
KVDIIIGTHQLVSSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLIGFNEEILRDAVSYELQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMITSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDADFENLFDNEEDR
QKLFKSVKDVNIDTDLELMLPDFYISNTEERLLLYQKIAEIDNEKDLHQFELELIDRFGA
LPKEAVNLLKSVALKWLAAEIGFEKIVMKNGVFLGYFPANPQDKFYQTDRFRHIISYLTQ
NPAEAQLKEKIGKEGNLLMMRKEKVKNVDEVNILLKTIIGHN
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcagctaaaacctattcatgaaaagtttcttcccgacctgcttcagaaagaatttgga
aaagaaatctttacccagctagaaaaaagcaagcatatttccgtgaagggaagcgctggc
tcttcggtttctatttttgtagctgaactttttttaacgcagaagaagactgttcttttt
ctggtagatgataaagaagatgcgctgtacgccaatactgaaatggaggacctgcttgga
aaagataaagtgctttattttccggccacccatcttgaaccttatcaggtagaaaaaaca
cagaacgctaaccttgtgcttcgtacagaggttttaaataagatcaattccggaaaagct
cccaaggttattgtggcttacgccggagccttatctgaaaaagtactgaagaaagaagac
tttaaagcaatctctcatcatataaaagtaggcgaccagctggattttgattttgtagac
gagctgttgaaccactacaattttcagcaggcagattttgtgtctgagccgggagaattt
tctgtgcgaggaggcatcgttgatgtattttcctattccaatgagaagccttaccgtatt
actttctttggaaatgaggtggaaaatattaagacctttgatattgaaacacagctttcc
atagataaagtaaaggactttcagctggtttccaatatgaacttttcggtaaccggaacc
agggtttcactattgcagctgctgcctgaagaaagctttgtggtttccagaaatggagct
gtcggaatgcagaagatcagaactttttatgaaaaatcattagaaaaatatgatacctta
aataaagatattgctcacagaacacctcaggagctctttatttcggatcaggatttttta
tttgattttaagaaatttaaaaccattgattttgccggtactcctattgaaggtcttaaa
gagatcacagaaataaaagtggaacagctcccgcaaccttcttttcataaaaattttgaa
ctgctgatagaagatattgaagaaaaacaggccgaaggttttgatacctggatttctttc
tctaccgaaaagcagaaagaaagactcgagtctatatttgaagagctggaacatgagctt
ccttttaaaagctttaaatctgagcttcacgaaggctttgtagataacggacataaaatt
ctggtctatacggatcatcagattttcgaccgttatcagagatataaagcaaaaaatacc
ttcgcaaaatcggaacagcttaccctgaaagatttgatgtctttgaaaataggggattac
attgcccatattgatcatggaataggaaaattcatgggacttgtcaaagtgaataatgac
gggaagatccaggaatgttttaaacttacatacaaaaacggcgatttattatatgtaagt
atccactcacttcataagatttcaaaatataacgggcccgacggaaaagaaattgtcctg
agtaaacttggttcccccgcatggaaatctctgaagcagaaaacaaaagctaaagtaaag
cagatcgcctttgatctgatcaggctgtatgcagaaagaaaaacggcaaaaggcttttcc
tatacaccggattcctatcttcagaatgaacttgaagccagttttatctatgaagatacc
ccggaccaggaaaaagcaacgattgatgtaaagcgggatatggaggcagatacggtgatg
gacaggctggtttgcggtgacgttggtttcggaaaaacggaagtggctatccgggctgca
tttaaagcggcaactgacggaaagcaggtggcagtgttggttcctactactattcttgcg
tttcagcattacagaagttttaaggaaaggctgaaagatttcccggtcaatgtttcttat
gtgaacagattcagaacggccaaacagaaagcagaagcattagatggccttaaaaacgga
aaggtagatattattatcggaacacaccagctggtaagcagttcggttaaattcaaagat
cttggacttctgatcatcgatgaagagcataaattcggagtctctgtaaaagataaactg
aaaacactgaaaaataacgtagatacccttaccttaacagctactcctatcccaaggacg
cttcagttttccctgatggcagcaagggatctttctgttattaaaacaccgccaccgaac
agacagcctgttgatacacagctgatagggtttaatgaagaaatcttaagagatgccgtg
tcctatgaattacaaagggacgggcaggtttattttatcaataacaggattgaaaacctt
aaagatattgccggacttatccagaggcttgtccctgatgccagggtaattaccggacac
ggacaaatggagggcaaacagcttgaaaaaaatgtccttgattttatggaagggaagtat
gacgttcttgtttctacaacaatcgttgaaagtggagtggatgtacctaatgccaatacc
atatttatcaatgatgcccaaaggttcggaatggcagatcttcaccagatgaggggaaga
gtaggacgaagcaacagaaaggctttctgctatctcattacacctccatatgatatgata
acctccgatgccagaaaacggcttgaggctattgagcagttctcagaccttggaagcgga
ttccagattgcgatgaaagaccttgagatccggggtgcaggagaccttcttggggcggaa
caaagcggattcattaatgaaatgggctttgaaacctatcagaaactgatgcaggaagca
ttggaagaattgaaagatgatgcggattttgaaaaccttttcgataatgaagaagacaga
cagaaactatttaaatctgtaaaagatgttaatattgataccgatctggagctgatgctt
ccggacttctacatctcgaatacagaggaaaggctattgttatatcagaaaattgcagag
attgataacgaaaaagatctccatcagtttgaacttgagctgatcgaccgtttcggggct
ttgccgaaagaagcggtaaaccttttgaaaagcgttgcattgaaatggctggctgctgaa
ataggttttgaaaagattgtcatgaaaaacggagtgttcctggggtacttcccggccaat
cctcaagataaattctatcagacagacaggttcaggcatatcatcagctatttaacacag
aatcctgcagaggctcagcttaaagaaaagattggcaaagaaggaaacctgctcatgatg
agaaaggaaaaggtgaaaaatgtagatgaggttaacatacttttgaaaacaattatcgga
cataattaa
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