Chryseobacterium oryzae: MTP08_12880
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Entry
MTP08_12880 CDS
T08538
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
corz
Chryseobacterium oryzae
Pathway
corz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
corz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTP08_12880 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
corz03021
]
MTP08_12880 (rho)
03019 Messenger RNA biogenesis [BR:
corz03019
]
MTP08_12880 (rho)
Transcription machinery [BR:
corz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MTP08_12880 (rho)
Messenger RNA biogenesis [BR:
corz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MTP08_12880 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
Rho_N
AAA
Mor
Motif
Other DBs
NCBI-ProteinID:
UOE37930
LinkDB
All DBs
Position
complement(2834487..2836304)
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AA seq
605 aa
AA seq
DB search
MFNIETLRSKSVTELTKILKDLGVKVARTSNENDKIFAILDFQASNPKVTKEYFSSTEVS
ENKVEETAEKPVKNTSRKTPAPKKTTRKPVAEPEAKEEETQIATQDDIKPEEIVLPEVPE
NKEAQETSEEKPQNAPKQKRKRVSVTPKTETTVEETSETPVNADSQPVQAKEERPKRPQG
QGQSQNQKGQNHPNQNNGNSQNRNQNNHPNHNPNQNPNRNSEKHEESEPKKEFSFDGMVS
IEGVLEILPDNYGFLRSSDFSYISSPDDVYVSTAQIRNYGLKTGDTVTGIVRLPKEGEKY
FSLLKPTEVNGRDLAFIKDRVAFEYLTPLFPEEKFNLAGNNSTISTRIVDLFAPIGKGQR
AMIVAQPKTGKTMLLKDIANSIASNHPEVYMMVLLIDERPEEVTDMERSVNAEVIASTFD
EAADKHVKVANLVLAKAQRMVECGHDVVILLDSITRLARAYNTVTPASGKVLSGGVDANA
LHKPKRFFGAARKIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRKIANRR
IYPAIDLVSSSTRRDDLLLDEVTSQRMWILRKYLSEMNPVEAMEFVNKNIKGTLNNEEFL
MSMNK
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacatagaaacgttgaggtcaaaatccgttacggagttgactaaaatcttaaag
gatttgggcgtgaaggttgcaagaacaagcaatgaaaatgataaaatctttgcgatttta
gattttcaggcttctaaccctaaggtaacaaaagaatatttcagttctacagaagtttct
gaaaacaaagtagaagaaactgcagaaaaacctgtaaaaaacacttccagaaaaacacct
gctcctaagaagactaccagaaagccagttgcagagcccgaagcaaaagaagaggaaacg
cagattgcaacacaggatgatataaaaccagaagaaattgttttgcctgaagttcccgaa
aacaaagaagctcaagaaacttctgaagaaaaaccgcaaaacgctccaaagcaaaaaaga
aaaagagtttctgttactccaaaaacagaaacaacagtcgaggaaacttccgaaactcct
gtaaatgcagattctcagccagttcaggctaaagaagaaaggcctaaaagaccacaagga
caaggtcagtctcaaaatcaaaaaggtcagaatcatccgaatcaaaataacggaaattct
caaaatagaaatcagaacaatcaccctaatcataatcctaaccaaaatcctaacaggaat
tcagaaaaacatgaagaatctgagcctaaaaaggaattcagttttgatggaatggtaagt
atagaaggagttttagaaattttaccggataattacgggtttctaagatcatccgatttc
agttatatttcttcgccggatgatgtatatgtttctacggctcagataagaaattatggt
ttaaaaaccggagatactgtaacgggaattgtacgtttgccaaaagaaggagaaaaatat
ttttctcttctgaaacctaccgaagtaaacggtagagatttggctttcattaaagacaga
gtggcttttgaatatcttacgccgcttttccccgaagaaaaatttaatcttgcaggaaat
aattctaccatatccacaagaattgtagatctttttgcaccgataggaaaaggtcagaga
gcaatgattgtcgctcagcctaaaaccggtaaaaccatgttactgaaagatattgctaat
tctattgcatccaatcatcctgaagtttacatgatggttcttttgatagacgagcgacct
gaagaggtaaccgatatggaaagaagcgtgaatgccgaagtaattgcatctacatttgat
gaagctgcggataaacacgtaaaagttgccaatcttgttttggctaaagcacaaagaatg
gtagaatgtggccatgatgtagtaattcttttagattctattacaagattggcaagagct
tataataccgtaactcctgcttccggaaaggtgctttctggtggtgttgatgccaatgca
cttcataaaccgaaaagatttttcggagcggcaagaaaaattgaaggtggcggatcttta
acgattattgcaactgctttaatagatacaggatctaaaatggatgaagttatctttgaa
gaatttaaaggtacaggaaatatggaacttcagttagacagaaaaattgccaacagaaga
atttatcctgccatagatttggtttcatccagtacgcgtcgagacgatttacttttggat
gaagtaacttcgcaaagaatgtggattcttagaaaatacctttctgaaatgaatccggtg
gaagctatggaatttgtaaataaaaacattaaaggaactctgaataatgaagaattccta
atgtctatgaataaataa
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