Chryseobacterium oryzae: MTP08_13395
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Entry
MTP08_13395 CDS
T08538
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
corz
Chryseobacterium oryzae
Pathway
corz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
corz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MTP08_13395 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
corz03400
]
MTP08_13395 (mfd)
Enzymes [BR:
corz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MTP08_13395 (mfd)
DNA repair and recombination proteins [BR:
corz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MTP08_13395 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Latarcin
Choline_kin_N
SBP_bac_3
DUF5691
Motif
Other DBs
NCBI-ProteinID:
UOE38029
LinkDB
All DBs
Position
complement(2951814..2955176)
Genome browser
AA seq
1120 aa
AA seq
DB search
MQLKNISEKFLPDLLKKEFGKEILHSLENNTHLSVKGSAGSASSIFAAEVFLTQNKTVLF
LLDEKEEALYANTEMEDLLGNENVLYFPATHLEPYQIEKTQNANLVLRTEVLNKINSEKS
PKVIVAFMGALSEKVLKKEDFKAISHHIKTGDHLDFDFVDELLNHYQFQQTDFVSEPGEF
SVRGGIVDVFSFSNEKPYRITFFGNEVESIKTFDIETQLSVDKVDGFQLVSNMNFSVSGT
KVSLLEILPQDSVIISKNAVVGLQKIKSFYEKALEKYEGLNKDISHRTPQELFISDEEFL
FDYKKFKTIDFSSVGIENLKSTELKLNQTTQPSFHKNFEMLIENLREKHDDGYDLWISFS
TEKQKDRLESIFEELGHQISFKSFKSELHEGFLDQDHKILVYTDHQIFDRYQRYKAKNAF
AKSEQLTLKDLMSLKVGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVSI
HSLHKISKYNGPDGKEVVLSKLGSPAWKSLKQKTKAKVKQIAFDLIKLYAERKTARGFAF
SPDSYLQNELEASFVYEDTPDQEKATIDVKNDMENEGVMDRLVCGDVGFGKTEVAIRAAF
KAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNISYMNRFRTAKQKNETIEGLKNGK
LDIVIGTHQLTSEKIKFKDLGLLIIDEEHKFGVAVKDKLKTLKSNIDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVDTQIIGFNEEIIRDAVSYELQRDGQVYFINNRVENLK
DIAGLIQRLVPDAKVITGHGQMDGKQLEQNVLDFMDGKYDVLVSTTIVESGVDVPNANTI
FINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPFDMMTSDARKRLEAIEQFSDLGSGF
QIAMKDLEIRGAGDLLGGEQSGFINEMGFETYQKLMQEALEELKDDKDFENLFENEEERQ
KLFKSVKEVNIDTDLELMLPDSYVSSTEERLQLYQKLAEIDNEKDLHQFESELKDRFGDL
PDEAVNLLKSVALKWLAAEIGFEKIVMKNGIFLGYFPGNPQDKFYQTDKFRHIISYLTQN
PAQAQLKEKVAKEGNQLMMRKDKVKNVDEVNVLLKSILGI
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgcagctaaaaaacatcagcgaaaaatttttgcccgatttgttaaaaaaagaatttgga
aaagaaattttgcattctttagaaaataatactcatctttcagtaaagggtagtgcaggt
tctgcttcttctatttttgcggcagaagtttttcttacccagaacaaaacggttcttttt
ctcttggatgaaaaagaagaggcattgtatgcaaatacagaaatggaagatttgctcggt
aatgaaaacgtactttattttccggcgactcacctcgaaccctatcaaatcgagaaaaca
cagaatgcaaatcttgttttgcgaaccgaagttctcaataaaataaattctgaaaagtcg
cctaaagtaattgtagcttttatgggtgctttatctgaaaaagttcttaaaaaagaagat
tttaaagccatttcgcatcatataaaaactggagatcatctggattttgattttgttgat
gaactgttgaaccattatcagttccagcagaccgattttgtttccgagcccggagaattt
tctgttcgaggcgggattgtagatgttttttctttttccaacgaaaagccttacagaatt
acatttttcggcaacgaagtagaaagtataaaaactttcgatatagaaactcagctttca
gtagataaagtagacggttttcagttggtttccaatatgaatttctcagtgtcgggtaca
aaggtttctttactggaaattcttcctcaagattcggtaattatttctaaaaatgcggta
gttgggcttcagaaaattaaatctttctacgaaaaagcattagagaaatatgaaggttta
aataaagatatttctcacagaactccgcaggaactttttatttcggatgaagagtttttg
tttgattataagaaattcaaaacaatcgattttagtagtgttggcatagaaaatttgaaa
tcgactgaattaaaattaaaccaaaccactcagccttctttccataagaattttgaaatg
ctcatcgaaaatctccgcgagaaacatgatgatggctacgatttatggatttctttttcc
acagaaaagcaaaaagacagactcgaatctatttttgaagaacttggacatcaaatttct
tttaaaagctttaaatctgaactgcatgaggggtttttagatcaggatcataaaattctg
gtgtataccgatcatcagattttcgaccgttaccaaaggtacaaagcaaaaaatgctttt
gcgaaatctgagcagttaacattgaaggatttaatgtctttaaaagtgggagattatatt
gcccatatcgaccatggaattggtaaattcatgggattggtgaaagtaaataatgatggt
aaaattcaggaatgtttcaaacttacctataaaaatggagatttactctatgtgagtatt
cattctttacacaaaatttccaaatacaacggtccagacggaaaagaagttgttttaagt
aaactgggatctcctgcctggaaatctctaaaacagaaaactaaagccaaagttaagcag
attgctttcgacctgataaaactttatgccgaaagaaaaacagcaagaggcttcgcattc
agtccggattcttatctgcagaatgagttggaggcaagctttgtctacgaagatactcca
gatcaggaaaaagcgaccatcgatgtgaagaatgatatggaaaatgaaggcgttatggat
cgtttggtatgtggtgatgttggttttggtaaaactgaagttgctattagagctgctttt
aaagctgcaaccgatggaaagcaggtggcggttttggttcctaccacaattttggcgttt
cagcattacagaagctttaaagaaagactgaaagattttcctgttaatatttcttatatg
aaccgcttccgaactgcaaagcagaaaaatgaaacgattgaaggtttaaaaaacgggaaa
ctggatattgtgattggtacacatcaactcacatcagaaaaaattaaatttaaagattta
ggattactcattatagatgaagaacataagtttggagttgcggtaaaagataagcttaaa
acgctgaaaagtaatattgatacgcttactcttacagccacacccattccgcgaacactt
cagttttctttaatggcagcgagagatttgtcggtcattaaaactcctccgccaaacaga
cagcctgtagatactcagattattggctttaatgaagaaattattcgcgatgcggtgtct
tatgaacttcaaagagacggtcaggtatattttatcaataacagagtagaaaacctgaaa
gatattgcagggcttattcaacggttggttccggatgcaaaagttattacgggtcacgga
caaatggatggtaaacagcttgagcagaatgtactcgattttatggatgggaaatatgat
gttttggtttctaccaccattgtagaaagtggagtagatgttcctaatgccaatactatt
ttcattaatgatgcacagcgttttgggatggcagatctccaccagatgagaggaagagta
ggacgaagcaatagaaaagcgttttgctaccttattactccgccttttgatatgatgact
tccgatgccagaaaaagacttgaagcgatagaacagttttcggatttgggcagtggattt
caaattgcgatgaaggatctggaaattcgtggagccggtgatttgttgggtggtgaacag
agcggatttatcaatgaaatgggtttcgaaacctatcagaaacttatgcaggaagcattg
gaagaacttaaagatgataaagattttgaaaatttattcgaaaatgaagaggaaagacaa
aaactattcaaatcggtaaaagaagtaaacattgatacagatttggaactgatgttaccc
gattcttacgtttccagtactgaagagaggttgcagctttaccaaaaactggcagaaatc
gacaacgaaaaagatcttcatcaatttgaatctgaacttaaagaccgttttggagatttg
cctgatgaagctgttaatttactgaaaagtgttgcgctgaaatggcttgctgccgaaata
ggttttgaaaaaatagtgatgaaaaacggtatattcttagggtattttccgggaaatcct
caggataaattttatcagaccgataaattcagacatattatttcttatcttactcaaaac
cccgcacaggctcaactgaaagaaaaagtggctaaagaaggcaatcagctcatgatgcga
aaagataaagtgaaaaatgtagatgaagtaaatgttttgctgaaatctattttgggaata
tga
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