Colwellia sp. Arc7-635: EKO29_14610
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Entry
EKO29_14610 CDS
T06022
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cov
Colwellia sp. Arc7-635
Pathway
cov03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EKO29_14610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cov03400
]
EKO29_14610
Enzymes [BR:
cov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EKO29_14610
DNA repair and recombination proteins [BR:
cov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EKO29_14610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
ERCC3_RAD25_C
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AZQ85104
UniProt:
A0A3Q9GCE3
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All DBs
Position
3378783..3382292
Genome browser
AA seq
1169 aa
AA seq
DB search
MSKNINLFSPVLAKSRGKSADKKVWQNLPGSSASVAIFHAALSTPQPILLITHDTPSALR
LEQELVSLNRQAKLPICLFPDWETLPYDTFSPHQDIISQRLATLYQLSRMDKGIVIVPIT
TLMQRLAPKQYLEANSLIIKKGDKKDLHLLRKDLEASGYRCVDQVMEHGEFSARGAILDL
FPMGSKTPFRLDFFDDEIDEIRLFDPENQRSSDKVDGIDLLPAHEFPTDTDGTNLFRSQY
REQFTSAIDKESIYHKVSNGIMPAGIEYYLPLFFEQTNTLCDYLSDNTLVIISGDIDNAL
AHHWTDIEYRYEDRRYDPTRPLLPPSQLFLNSEELYSALKPFDRISLKPELNEEDVKSSQ
IQFDVHALPDLTIDHKLKQPFELLNNFAASKETPDKLLFVAESQGRRESVLELLQRNQLK
PNTFDSIEDFVNSDEKLGITVNALSAGFIFQAKGSAKKNAIALITEAELLGDRIRQTRRR
NKQQEIQNDAIFKNLAELSIGQPVVHIDHGIGRYMGLQTIENSGITTEFLMLSYAKEAKL
YVPVASLHLISRYSGADAEHAPLHKLGNDTWSKAKQKAAEKVRDVAAELLDIYAKRASNH
GYSFKRDKDDYRAFADSFGFEETFDQAQAINAVISDMLSPKAMDRLVCGDVGFGKTEVAM
RAAFVAVNDGKQVAILVPTTLLAQQHYESFRDRFANWPISIEVLSRFKTTKEQNAIIKEV
ESGQIDILIGTHKLLQNSIKYKDLGLLVVDEEHRFGVKQKEKIKQLRANVDILTLTATPI
PRTLNMAMGGMRDLSIIATPPAKRLAVKTFVRERDDALIRESILREILRGGQVYFLHNNV
DTIDKTAADIQVLLPEAKVITAHGQMRERELERVMSDFYHQRYNVLVCTTIIETGIDVPS
ANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHEKRMTKDAKKRLDAIASLEDL
GAGFTLATHDLEIRGAGELLGEDQSGSMSQIGFSLYMEMLDAAVAALKDGKQLSLDQVMR
TQTEVDLRVAALLPDDYIFDVSLRLSIYKRIASCKSKLELDDVQVELIDRFGLLPQPAKN
LVHLAKLKLKAEKLGITRIDAGPTGGFFEFGNETKVDPMFIIGLIQQQPKIYKMDGATKF
KFVQATEDAKSRFILIATMLNEFEKHTRA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaaacattaatctattcagtcctgtattagctaaaagccgtggtaaaagtgcc
gataagaaagtttggcagaacctgcccggtagcagtgcaagtgtcgctatttttcatgct
gctttatcaacaccacagcccatattattaattactcatgatacgccttcagcattgcgc
ctagagcaagagctggtgagcttaaaccgacaagcaaagttacctatttgtttatttcca
gattgggaaaccttgccctacgatactttttcaccgcatcaagatattatttctcagcgt
ttagcgactttatatcagctttcacgcatggataaaggcattgttattgtgcctattact
accttaatgcaacgcttagcgccaaaacagtatttagaagctaacagcctaattattaaa
aaaggcgataaaaaagacttacacctgcttcgaaaagacctagaagcgagtggttatcgc
tgtgttgatcaagtgatggaacacggtgagttttcagcccgtggcgctattcttgattta
tttccgatgggcagcaaaacaccttttcgtttagatttttttgatgatgaaattgacgaa
attcgcttatttgatcctgagaatcagcgctcaagtgataaagttgatggcatcgactta
ttgcccgcacatgaatttccaacagacactgacggcaccaatttatttcgcagccaatat
cgtgaacaattcaccagtgctatcgacaaagaatcgatttatcataaagttagtaacggt
attatgcccgcgggtatcgaatattacttaccgttgtttttcgagcaaaccaatacctta
tgcgactaccttagcgataatactttagtcattattagcggtgatattgataacgcttta
gcgcaccattggaccgatattgaatatcgctatgaagacagacgctacgatcctacgcgc
ccattgttgccaccaagccaattatttctcaatagtgaagagctttacagcgccttaaaa
ccttttgatcgcatcagcttaaagccagagcttaacgaagaagacgttaaaagctcgcaa
atacagtttgatgtacacgcattgcctgacttaaccattgatcataaattaaagcagccg
ttcgaattactcaataactttgccgctagcaaagaaacccccgataaactgctatttgtt
gctgaaagccaaggtcgacgcgaaagtgttttagagctacttcagcgtaatcagttaaaa
ccgaacacgtttgacagcattgaagactttgttaatagtgacgaaaaactgggtattacg
gttaacgctttaagtgctggttttatttttcaagcgaaaggcagtgcgaagaaaaatgcc
attgccttaattactgaagctgagctacttggcgatcgcattcgtcaaactcgtcgccgt
aataaacaacaagaaattcaaaacgacgcaatatttaaaaacttagctgaactcagtatt
ggccaacctgtggtacatattgatcatggtattggtcgctacatgggtttacaaaccatt
gaaaacagtggcattaccactgagtttttaatgctaagttacgcgaaagaagccaagctt
tatgtacctgtcgcctcgctacatttaattagtcgctactctggcgctgacgctgaacat
gcgccgttacataaattaggtaacgacacctggagtaaagctaagcaaaaagccgcagag
aaagtacgtgatgttgccgctgaactgttagacatttatgccaaacgcgccagcaatcat
ggttatagttttaaacgtgataaagacgattatcgcgcctttgctgacagctttggcttt
gaagaaaccttcgatcaagcgcaagctataaacgctgttatcagcgatatgctatcgcca
aaagccatggacagattagtgtgtggtgatgtaggttttggtaaaaccgaagtggccatg
cgcgcagcatttgttgcagtaaatgacggtaagcaagtcgcgatattagtgccaactacc
ctattggctcaacaacattatgagagctttcgtgatcgctttgccaattggccaattagc
atcgaagtgttatcgcgctttaaaaccacaaaagagcaaaacgcgattatcaaagaggtc
gagtctggccaaatcgacattttaattggtacccacaagcttttacaaaatagcattaaa
tataaagacctaggcttgctcgttgttgatgaagagcacaggtttggtgttaaacaaaaa
gaaaaaattaaacagcttcgcgccaatgttgatattttaacgctaacggctacgccgatt
ccgcgaactttaaatatggcgatgggtggcatgcgtgacttatccataatagcaacgcca
cctgcaaaacgattagccgtaaaaacctttgtgagagagcgtgatgacgccttaatacgt
gagtctatacttcgtgaaatattacgtggtggtcaggtctatttcttacataataatgtc
gacactattgataaaacggccgctgatatacaagtattgttacccgaagctaaagttatt
accgcgcatgggcaaatgcgagaacgtgaacttgaacgtgtgatgagtgatttttatcac
caacgttataacgttttagtttgtaccactattattgaaaccggtatcgatgtgcccagt
gccaacaccattatcatggaccgagcagatcatttgggcttagcacagctacatcaatta
cgtggtcgtgttggtcgctcgcatcaccaagcttatgcctacttattaacaccacatgaa
aaacgcatgaccaaagatgcgaaaaagcgcctggatgctatcgcttcattagaagactta
ggcgcaggttttactttggcaacccacgatttagaaatacgtggcgccggagaactatta
ggtgaagaccaaagtggttccatgagccaaatcggctttagcctttacatggagatgctt
gacgctgcggtagcggcattaaaagatggtaagcaattatcacttgatcaagtcatgaga
acgcaaactgaagtcgatttacgcgtagcagcactattacctgatgactatatcttcgac
gtcagcttacgattgagcatatataaacgtattgctagttgtaaaagcaagttggaacta
gacgacgtgcaagtagagttaattgaccgttttggcttattgccacaacctgcgaaaaac
ctagttcaccttgctaagctcaaactcaaagctgaaaaattgggtattacacgcatcgac
gctggacctacgggaggtttctttgaatttggcaatgagactaaggttgatcctatgttc
atcattggcttaattcagcaacaaccgaaaatatataaaatggatggcgcaactaagttc
aaatttgtacaagcaaccgaagacgcaaaatcacgcttcatattaattgccacaatgttg
aacgaatttgagaaacatacacgagcataa
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