Cupriavidus oxalaticus: E0W60_17195
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Entry
E0W60_17195 CDS
T06004
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cox
Cupriavidus oxalaticus
Pathway
cox03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E0W60_17195 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cox03400
]
E0W60_17195 (mfd)
Enzymes [BR:
cox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E0W60_17195 (mfd)
DNA repair and recombination proteins [BR:
cox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E0W60_17195 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBY52888
UniProt:
A0A4P7LBK4
LinkDB
All DBs
Position
2:complement(1369220..1372669)
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AA seq
1149 aa
AA seq
DB search
MPDATPSLPFVNLPLVKPGLRHTVAGLRGSADALALAAYARQHRARAPMLAVVCANAVDA
QRLAEEIPWFAPELRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQGGQCDVMLVPAS
TALYRLAPPSFLAAYTFFFKQGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDL
YPMGSALPYRIDLFGDEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDEAARTAFRGRW
REVFEGDPTKSPIYKDIGNGVPSAGIEYYLPLFFEESATLFDYLPADTQLAFAGNIDEAI
RRFWADTTQRYNFMRHDRERPLLPPADLFLSEEQFFVGAKPMARLVLQTEPGADQVPFSA
ILPDVSVNRRAEDPLVNLESLLLDTQTRVLMCADSAGRRETLLQLFAESGLRPHPVDDFA
AFLAGEAHFSIAVAPLQSGFALPQGQLAFVTEAELYAGTARRAGRRKQEQATAVDSMVRD
LAELKIGDPVVHSEHGIGRYHGLVSLDMGQGDEEFLHLEYDKSSKLYVPVHQLHVISRYS
GADPDTAPLHHLGSGQWDKAKRRAAQQIRDTAAELLNLYARRAAREGFAFPLSPKDYETF
AESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVA
MLAPTTLLAEQHFQTLSDRFAEWPVRIVELSRFKTKKEIDAAIRQINEGSVDIVIGTHKI
LSDQVRFQRLGLVIIDEEHRFGVRQKEALKTLRAEVDILTLTATPIPRTLGMALEGLRDF
SVIATAPQKRLAIKTFVRREEDGVIREAILRELKRGGQIYFLHNEVETIENKRAKLAELV
PEARIAVAHGQMHERELERVMRDFVSRRDNILLCTTIIETGIDVPTANTILIHRADKFGL
AQLHQLRGRVGRSHHQAYAYLLVHDVDGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIR
GAGEVLGDKQSGEIHEIGFQLYTDMLNHAVKALKAGKEPDLMAPLAATTEINLGTPALLP
NDYCGDVHERLSLYKRLANCETAERVDDIQEELIDRFGRLPAQAQALVETHRLRIAAAPL
GVRKIDAGEATFSVQFVPNPPIDAMRIIDLVQKNRHIKLAGQDKLRIEAKMPDVTVRAQT
IKHTLRQLS
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacgctacgccctccctgcccttcgtcaacctgccgctggtcaagcccggcctg
cgccacaccgtcgccggcctgcgtggctcggccgatgccctggcccttgccgcctacgcg
cggcagcaccgcgcgcgcgcgccgatgctggcagtggtgtgcgccaatgccgtcgacgcc
cagcgcctggccgaggaaatcccctggttcgcgcccgagctgcgcgtgcgcctgctgccc
gactgggaaacgctgccctacgacagcttctcgccgcaccaggacctggtctccgaacgc
ctggccacgctgcacgacatccagggcgggcaatgcgacgtgatgctggtgccggccagc
accgcgctgtaccggctcgcgccaccgtccttcctggccgcctacaccttcttcttcaag
cagggcgagcgcctggacgaggccgcgctgaaggcgcagttcacgctggccggctacgag
cacgtcagcgccgtgatgcgcccgggcgaatacagcgtgcgcggcggcctgatcgacctg
tacccgatgggatctgcgctgccgtaccggatcgacctgttcggcgacgagatcgagact
atccgcgcgtttgacccggacacgcagcgcagcctttacccggtcaaggaagtgcgcctg
ctgccgggccgcgaattccccctcgacgaagccgcgcgcaccgcgttccgcggccgctgg
cgcgaagtcttcgagggtgacccgaccaagtcgccgatctacaaggacatcggcaacggc
gtgccgtcggcgggcatcgagtactacctgccgctgtttttcgaagagagcgcgacgctg
ttcgactacctgcccgcggatacccaactggccttcgcgggcaacatcgacgaagcgatc
cgccgcttctgggccgacaccacgcagcgctacaacttcatgcggcacgaccgcgagcgt
ccgctgctgccgccggccgacctgttcctgtccgaggagcagtttttcgtcggcgccaag
ccgatggcgcggctggtgctgcagacggagccaggcgcggaccaggtgccgttctcggcg
atcctgccggatgtctccgtcaaccggcgcgcggaagatccgctggtaaacctggaatcg
ctgctgctcgacacgcagacccgcgtgctgatgtgcgccgattccgccggccggcgcgag
acgctgctgcagctgttcgccgaaagcggcctgcgcccgcatccggtggacgactttgcc
gcattcctcgccggcgaggcgcatttctcgatcgcggtggcacccttgcagagcggcttc
gcgttgccgcaaggtcagctcgccttcgtcaccgaagccgagctatatgccggcaccgcg
cgccgcgccggccgccgcaagcaggagcaggccaccgccgtcgactcgatggtgcgcgac
ctggccgaactgaagatcggcgatccggtggtgcacagcgagcacggtatcggccgctac
cacggcctggtgtccctcgacatgggccagggcgacgaggaattcctgcacctcgaatac
gacaaaagcagcaagctgtatgtgccggtgcaccagctgcacgtgatctcgcgctactcc
ggcgccgacccggacaccgcgccgctgcaccacctgggctcgggccagtgggacaaggcc
aagcgccgcgctgcgcagcagatccgcgataccgctgccgaattgctcaacctctacgca
cgccgcgccgctcgcgagggcttcgccttcccgctgtcgccgaaggactacgagaccttt
gccgaaagcttcggcttcgaggaaacgccggaccaggccgccgccatcgccgcagtgatc
gccgacatgacctcgggcaagccgatggaccggctggtctgcggcgacgtcggcttcggc
aagaccgaggtcgcgctgcgtgcggcctttgtcgcggtgctgggcggcaagcaggtggcg
atgctcgcgccgaccacgctgctggcggagcagcacttccagacgctgtccgaccgcttc
gcggaatggccggtgcgcatcgtcgaactgtcgcgcttcaagaccaagaaggagatcgac
gcggccatcaggcaaatcaacgagggcagcgtcgatatcgtcatcggcacgcacaagatc
ctgtccgaccaggtcaggttccagcggctgggcctggtcatcatcgacgaggaacaccgc
ttcggcgtgcgccagaaggaagcgctgaagacgctgcgcgccgaggtcgacatcctgacg
ctgaccgccacgccgattccgcgcacgctgggcatggcactggaaggcctgcgcgatttt
tcggtaatcgcgaccgcgccgcagaagcggctggcgatcaagaccttcgtgcgccgcgag
gaagacggcgtgatccgcgaggccatcctgcgcgaactcaagcgcggcggccagatctac
ttcctgcacaacgaggtcgagaccatcgagaacaagcgcgcgaagctcgccgagctggtg
cccgaggcgcgcatcgcggtggcgcacggccagatgcacgagcgcgagctggagcgcgtg
atgcgcgacttcgtctcgcgccgcgacaacatcctgctgtgcaccaccatcatcgagacc
ggcatcgacgtgccgaccgccaacaccatcctgatccaccgcgccgacaagttcgggctg
gcgcagctgcaccagctgcgcggccgcgtcgggcgttcgcaccaccaggcctatgcctac
ctgctggtgcatgatgtcgacggcctgaccaagcaggcgcagcgccggctcgaggcgatc
cagcagatggaggaactgggctcgggcttctacctggccatgcacgatctggaaatccgc
ggcgccggcgaggtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccag
ctctacaccgacatgctcaaccacgcggtcaaggcgctgaaggccggcaaggagccggac
ctgatggcaccgctggcggcgaccaccgagatcaacctcggcacgccggcgctgctgccc
aacgactactgcggcgatgtgcatgaacgcctgtcgctgtacaagcgcctggccaattgc
gaaaccgccgagcgtgtcgacgatatccaggaagaactgatcgaccgcttcggccgcctg
ccggcgcaggcgcaggcgctggtggaaacgcaccggctgcgcatcgccgcggcgccgctg
ggcgtgcgcaagatcgatgcgggcgaggccaccttcagcgtgcagttcgtgcccaacccg
ccgatcgatgccatgcgcatcatcgacctggtgcagaagaaccggcatatcaagctggcc
gggcaggacaagctgcgcatcgaggccaagatgccggacgtgacggtacgcgcgcagacg
atcaagcacacgctgcggcaactgtcgtaa
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integrated database retrieval system
