Chitinophaga oryzae: HF329_12165
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Entry
HF329_12165 CDS
T07451
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
coy
Chitinophaga oryzae
Pathway
coy02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HF329_12165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coy03021
]
HF329_12165
Transcription machinery [BR:
coy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HF329_12165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
NUMOD1
GerE
Sigma70_ECF
Ric8
HTH_17
HTH_10
Motif
Other DBs
NCBI-ProteinID:
QJB32038
LinkDB
All DBs
Position
3176029..3176598
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AA seq
189 aa
AA seq
DB search
MTTLLNKAELSAFDGIYSQYHQAVYKNICKLVFQPEVAEDILQEVFMALWNNRHKLELTH
DVARWLFVVSYNKSIQHLKNTAKEKTVLAAHPQQPVSTEDDNFALLKDLQLHLISDAIEQ
LSPRKKMIFRLCRLEGKSLQEAASILGISHHTAKEYLKASSAFIKTYIATQQATVPAAGL
LLLSAYLQY
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgactacgctactcaacaaagctgaactttccgcattcgacggtatctacagccagtat
catcaggctgtgtataaaaacatctgtaagctggtcttccaaccggaagtagcggaagac
atcctgcaggaggtctttatggcgctgtggaacaaccgtcacaaactggaacttacccat
gatgtggcccgctggctgtttgtagtgagctataacaaatctatccagcaccttaaaaat
accgccaaagaaaagaccgtgctggcggcacatccccaacagcccgtatccaccgaagac
gataactttgcgctgttgaaagacctgcagctgcacctgatcagcgacgccatcgagcaa
ctgtcgccccggaagaagatgattttccgcctttgccggctggaagggaagtcactgcag
gaagccgcctccatccttggcatctcccatcataccgctaaagaatacctgaaagcatcc
tccgcctttattaaaacctacatcgccacgcaacaagccaccgttcctgcagcgggtttg
ttgctcctcagcgcctaccttcaatactga
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