Caminibacter pacificus: C6V80_01080
Help
Entry
C6V80_01080 CDS
T06023
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpaf
Caminibacter pacificus
Pathway
cpaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C6V80_01080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpaf03400
]
C6V80_01080
Enzymes [BR:
cpaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C6V80_01080
DNA repair and recombination proteins [BR:
cpaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C6V80_01080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
ResIII
CarD_TRCF_RID
AAA_30
TsaE
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QCI27603
LinkDB
All DBs
Position
197845..200793
Genome browser
AA seq
982 aa
AA seq
DB search
MQAKVYEFLKENKNNIVTANIKEALNIAEVYKYLDIPVVVFPDFRAVFGDDLRSFRKEIF
ELNNALYKYYNENYYFVSPYATLMKKLPVKRYYRDIDINFGDEINLNELKETLIFWGYEV
VDIVSEKGEVSFRGDIFDIWPINYEKPFRVSLFDVEVESIRIFDETNQKSIEEVESFKII
PAIAALDKEEYEKIQDEIAKSEFATFYKDFYSLGFWFLERDFINDFVLLHDITQEIEEYR
EFYKEFNEAVVNAKIIPQGECKDCKWRIEDKKILIDQKPWDGKTPLEIVAKNEILLKEYD
LFEFVKYKAPLVKWIKNSAHVNFACNDKIVISLNPPEFEKKRKVSLAIDELKKGDFVVHQ
QHGIGKFMGLKKMEVLGKIGEFAEVLYANDDKLLLPVENLNLIDRYIAPGGVIPTLDKLG
KGSFAKKLAKVKEKVYAIAADIIKLAAEREVIEPIKLDFKGVEEFIKKAPFTHTPDQKKA
IEEIISDFKSKVMDRLLSGDVGFGKTEVAMVASFIVAKSGYQVAVIAPTTILVNQHYESF
KERFKDYPEIKIAKLDRFTLSKEKKEIIEGVKKGEIDILISTHAGLNVEYKNLGLVIIDE
EHKFGVKQKEALKEFAKNVHTLYMSATPIPRTLNMALSKIKSISTLETAPKGKQETKTFV
KEWDENLIKEAILREIRRGGQIFYIYNNIAYIEQKKKELQELLPNLRILTLHAKMTPSQI
EKGLVDFINGKYDLALTTTIVESGIHIPNVNTVIVENADRFGIADLHQIRGRVGRGKNEG
YAYFLVKDKEELSEDAKKRLLALEENSFIGSGQVLALKDLEIRGGGNIVGAEQSGQVKGV
GYSMYIKMLEDTLKEMLGEKKEESEVEVKLNINAYLSDKIITEDRLRLDLYKRLSRAKTL
KEVFEIEKEIVDRFGKIDTPTQNFIEKIKIKVLAQQKGIKAISNYGQNISIQYENGEKEV
IKAPAKDDEIILETIINKLKEK
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagcgaaagtatatgagtttttgaaagagaataaaaacaatatcgtaacggctaat
attaaagaggcgttgaatattgcggaagtatataaatatttagatatacccgttgtggtt
tttcctgattttagggcggttttcggagatgatttgagaagtttcagaaaagagatattt
gagcttaataacgctttatataaatattacaacgaaaattattatttcgtctctccttac
gctacgcttatgaaaaaacttcccgtaaaaagatattatcgggatattgatataaatttc
ggagatgaaataaacctcaacgaactaaaagagacgttaattttttggggatatgaggtt
gttgatatcgtgagcgaaaaaggtgaggtgagttttagaggggatattttcgatatttgg
cctattaattacgaaaagccttttagggtctctttgtttgatgttgaggtggaaagtata
agaatttttgacgagacgaatcaaaaaagtatcgaagaagtggaaagttttaagattatt
ccggcaattgccgctttggataaagaggagtacgaaaaaatccaagacgaaatagcaaaa
agcgagtttgcgacattttataaagatttttattctctcgggttttggtttttagaaaga
gattttataaatgatttcgttttgcttcacgatataactcaagagatagaagaatacagg
gagttttataaagagtttaacgaagccgttgtgaatgctaagataattcctcaaggtgaa
tgcaaggattgcaagtggagaatagaggataaaaaaatattgattgatcaaaaaccttgg
gatggcaaaactcctcttgaaatagtggctaaaaacgaaattttacttaaagaatacgac
ctttttgaatttgtaaaatataaagctccgcttgtaaaatggataaaaaattcggctcat
gtcaattttgcttgcaatgacaaaatagttatttctctaaatcctcctgaatttgagaaa
aaaagaaaagtctctcttgcgatagacgagcttaaaaaaggagatttcgtagttcatcag
cagcacggaatcggtaagtttatggggcttaaaaaaatggaggttttaggaaaaatagga
gaatttgcggaagtgttatatgctaatgacgataaattgcttttacctgtcgaaaacctt
aatttgatagacagatatattgccccgggcggtgtaattcctacacttgataaactcgga
aaaggtagttttgcaaaaaaactcgcaaaagtaaaagaaaaagtttatgcaattgcagcg
gatatcataaaacttgccgccgagcgtgaagtgatagagcctattaagttggattttaaa
ggagtggaagagtttataaaaaaagcaccttttactcatacgccggatcagaaaaaggcg
attgaagagataattagcgatttcaagtcaaaagttatggataggctgctaagcggtgat
gtcggttttggaaaaaccgaagttgcgatggttgcaagctttatagtggcaaaatcgggc
tatcaggtggcggtaattgcacctactaccattttggttaatcagcactacgaaagcttt
aaagagagatttaaagattatcctgaaattaaaattgccaaacttgacagatttacttta
agcaaagagaaaaaagagataatcgaaggcgtaaaaaaaggcgaaatagatatcttaatt
tcaactcatgccggacttaacgtggaatataaaaatttagggcttgtgataatagacgaa
gagcacaaattcggcgtaaaacaaaaagaggcgctcaaagaattcgctaaaaacgtacat
actttatatatgagtgcgacgcctataccaagaactcttaatatggctcttagcaagata
aaatcaatctcaactctcgaaaccgctccaaaaggcaaacaagagaccaaaacgtttgta
aaagagtgggatgaaaatttaattaaagaagcgattttaagagaaatcagaagaggcggt
cagattttttatatctataacaacatcgcgtatatcgaacaaaagaaaaaagaacttcaa
gagttgttgccaaatcttagaatcctaactcttcatgccaaaatgactccgagtcagata
gaaaaagggcttgttgattttataaacggaaaatacgatttggctttgacgactactatc
gtagaaagcgggattcatattcctaatgtcaataccgtaatcgtagaaaacgccgataga
ttcggaatagcggacttgcatcaaataagaggaagagtggggcgcggtaaaaatgaaggg
tatgcttactttttggtaaaagataaagaagagttaagcgaagatgccaaaaaaagactt
ttggctcttgaagagaattcgtttatcggaagcggacaggttttggctcttaaagacctt
gaaattagaggcggaggaaatatcgtaggtgccgagcagtccggacaggttaaaggggtt
gggtattcgatgtatatcaaaatgcttgaggataccttaaaagagatgttgggtgagaaa
aaagaagagagcgaagttgaggttaagctaaatatcaacgcatatcttagcgataaaatt
attaccgaagacagactaagacttgatttatataaacgtctctcacgtgccaaaacgtta
aaagaagtgtttgaaatcgaaaaagagattgtcgatagattcggaaaaatagatacacct
actcaaaacttcatagaaaagataaaaataaaagttttagcacagcaaaaaggtataaaa
gctatttcaaactacggacaaaatatttctatacaatatgaaaacggagaaaaagaagta
ataaaagctcctgctaaagatgatgaaataattcttgagacaattataaataaactgaaa
gaaaaatga
DBGET
integrated database retrieval system
