Cellulomonas palmilytica: F1D97_09910
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Entry
F1D97_09910 CDS
T08423
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cpal
Cellulomonas palmilytica
Pathway
cpal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1D97_09910 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpal03019
]
F1D97_09910 (rny)
Messenger RNA biogenesis [BR:
cpal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F1D97_09910 (rny)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HD
KH_1
RNase_Y_N
HDOD
LMBR1
KhpA-B_KH
KH_2
TM_ErbB1
Motif
Other DBs
NCBI-ProteinID:
UJP38729
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Position
2193618..2195150
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AA seq
510 aa
AA seq
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MGESGVATVVGLLGACLVALILVLLARREAAAQREQAAKDVAEIKEEARELLASAERREQ
RARERDEATTAAQSQAQAAEERAREHERTAQAAERAAERALAAAERDSAARVDDAARQAR
ETVERAQAQARAELESAAGLTQDEARAALTRRITEQAQNEASSYVRRAEAQARRTAEARA
RRILATAVHRTAVATSAQAGLTVVTVPSDEMKGRIIGKEGRNIRSFEALTGVNVLVDEQP
DAVVLSCFDAERREVAQVTLEALVADGRIHPQRIEEAYADALAGADERAVAAGHAAAERA
GVEDLHPVLVRTLGRLRLRTSYGQNVLEHLVECALLAGSVAAELGADEQRARRAALLHDV
GKALTNEIPGTHAAVGAELARRHGEDDVVVNAIAAHHDEVPLETVEAVVVQIADAVSAAR
PGARRQELDQYLERMDRLESLVAAHRGVRRALAMAAGREVRVVVEPSEVADDALPELARA
IARHIEADLTYPGEITVTVVREIRASATAD
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
gtgggcgagagcggggtcgcgacagtcgtcgggctgctcggcgcgtgcctggtcgcgctc
atccttgtgctcctcgcgcgccgtgaggcggccgcgcagcgcgagcaggcagccaaggac
gtcgccgagatcaaggaggaggcgcgcgagctcctcgcctccgccgagcgccgcgagcag
cgcgcgcgtgagcgcgacgaggcgacgacggccgcgcagtcccaggcgcaggccgccgag
gagcgcgcgcgcgagcacgagcgcaccgcgcaggcggccgagcgtgccgccgagcgtgcg
ctcgccgcagccgagcgagacagcgccgcccgggtggacgacgccgcccggcaggcgcgc
gagacggtcgagcgcgcgcaggcgcaggcccgcgccgagctcgagtccgcagccggcctg
acgcaggacgaggcgcgcgccgcgctgacccggcgcatcaccgagcaggcgcagaacgag
gcgtcgtcgtacgtgcgccgcgcggaggcgcaggcgcgccgcaccgccgaggcccgcgcg
cggcgcatcctcgcgaccgcggtgcaccgcaccgccgtggccacgagcgcccaggcgggg
ctcaccgtcgtgaccgtgccgtccgacgagatgaagggccggatcatcggcaaggagggc
cgcaacatccggtccttcgaggcgctcacgggcgtcaacgtgctggtcgacgagcagccg
gacgccgtcgtgctctcgtgcttcgacgcggagcgccgcgaggtcgcgcaggtcacgctc
gaggcgctcgtcgccgacggtcggatccacccgcagcgcatcgaggaggcgtacgccgac
gcgctcgccggagcggacgagcgtgcggtcgccgccgggcacgcggcggccgagcgcgcg
ggagtcgaggacctgcacccggtgctcgtgcggacgctcgggcggctgcgcctgaggacg
tcctacggccagaacgtcctcgagcacctggtcgagtgcgcgctcctcgcggggtcggtc
gcggccgagctcggtgcggacgagcagcgcgcccggcgtgcggcgctgctgcacgacgtg
ggcaaggccctcacgaacgagatcccagggacgcacgccgcggtgggtgcggagctcgcg
cggcggcacggcgaggacgacgtcgtcgtcaacgcgatcgccgcgcaccacgacgaggtg
ccgctcgagacggtcgaggcggtcgtcgtgcagatcgcggacgcggtctcggcggcgcgt
ccgggtgcgcgccggcaggagctcgaccagtacctcgagcgcatggaccggctcgagagc
ctggtcgcggcgcaccgcggcgtgcgccgcgcgctcgcgatggcggcgggccgtgaggtg
cgcgtcgtcgtcgagccgtccgaggtcgccgacgacgcgctgccggagctcgctcgtgcc
atcgcccgccacatcgaggcggacctgacgtaccccggcgagatcaccgtgaccgtcgtg
cgggagatccgcgcgagcgcgaccgccgactga
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