Carica papaya (papaya): 110808556
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Entry
110808556 CDS
T05151
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03022
Basal transcription factors
cpap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110808556
09124 Replication and repair
03420 Nucleotide excision repair
110808556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpap03021
]
110808556
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110808556
Transcription machinery [BR:
cpap03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110808556
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110808556
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Tfb4
IBR
Motif
Other DBs
NCBI-GeneID:
110808556
NCBI-ProteinID:
XP_021889776
LinkDB
All DBs
Position
Unknown
AA seq
423 aa
AA seq
DB search
MNTGERKRLNGEAEEDDDDDLDGEGFNAWERTYADERSWESLQEDESGLLRPIDNKAIYH
AQYRRRLRSLSSSATTARIQKGLIRYLYIVIDLSRAAAEMDIRPSRMFVVARHVEAFIRE
FFDQNPLSQIALVTIKDGVANMLTDLGGSPESHIKALMGKLECSGESSLQNALELVHGYL
NQIPSYGHREVLILYSALSTCDPGDIMETIQKCKKSKIRCSVIGLSAEMFICKHLCQETG
GLYSVAMDEAHLKELILEHAPPPPAIAEYAIANLIKMGFPQRAAEASISICSCHKEAKVG
AGYTCPRCKARVCELPTDCCICGLTLVSSPHLARSYHHLFPIAPFDEVSVSDLTNMHNKF
PKNCFGCQQSLLATGNKPGPCVSCRTCRQYFCLDCDIYIHESLHNCPGCDSIRRSKSVTN
NEE
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaacactggtgagagaaaaaggttgaatggagaagcagaagaagatgatgatgatgat
ttggatggggaaggctttaatgcatgggagagaacttacgcagatgagcgatcatgggaa
tccttgcaagaggatgagtctgggctgcttcgtcctattgacaacaaagcaatctatcac
gcacagtatcggcggcggcttcgttccctttcctcatctgccacgactgctcgaattcaa
aagggtctcattcgctacctctacattgtcattgatctctcgcgggcagctgcagagatg
gatattcgacctagccggatgtttgtggttgcaagacatgtcgaggcttttattcgggag
ttttttgaccagaatcctcttagtcaaattgctcttgtaaccataaaagacggcgttgct
aatatgctaacagatcttggtggcagtcctgagtcccatataaaagccttgatgggcaag
ctcgagtgctcaggtgaatcatctttacagaatgccttggaacttgtgcatggatattta
aaccaaataccatcatatggtcatcgtgaagttctgatcctatattcggctctcagtact
tgtgatcctggggatataatggagacaattcagaaatgcaagaaatcaaaaataaggtgt
tctgttatcggcctttctgctgagatgttcatatgcaagcatctctgccaagaaactggt
ggcctatactctgttgcaatggatgaggcccacctcaaagagctaatattagagcatgcg
ccacctcctccagcaatagcagaatatgcgattgcaaacttgatcaaaatgggtttccca
caaagagcagcggaggcatctatttcaatctgttcatgtcataaagaagctaaggttggt
gcagggtatacctgtccaagatgtaaggctcgtgtttgtgagttgcctacagactgttgt
atatgtggtttgactcttgtttcttcaccccatctggcaagatcataccaccatctcttt
cccattgctccatttgatgaggtttctgtgtcagatctaactaatatgcataacaaattc
ccgaagaattgttttggttgccaacaaagcctcctcgctacagggaacaaacccggtcca
tgtgtttcttgtcgaacatgcagacaatacttctgcctcgactgtgatatttatattcat
gaaagtttgcacaattgtccaggttgtgatagcattagacgttccaagtcggtcaccaat
aatgaagaatga
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