Carica papaya (papaya): 110809937
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Entry
110809937 CDS
T05151
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03013
Nucleocytoplasmic transport
cpap03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110809937
03015 mRNA surveillance pathway
110809937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110809937
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110809937
mRNA cycle factors
P-body specific factors
110809937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
110809937
NCBI-ProteinID:
XP_021891616
LinkDB
All DBs
Position
Unknown
AA seq
486 aa
AA seq
DB search
MKGPLDRTKVVLRHLPPAISQATLMEQIDVAFSGRYNWVSFRPGKGSQRQQSYSRAYIDF
KRPDDVLEFAEFFNGHVFVNEKGTQFRPIVEYAPSQRVPKQWSKKDGREGTIFKDPEYLS
LLVFPHLAFAGASKETPIVTPLMDFVRQKRAAKDGSRRSSSNGKPSRRATGSSGRSPGST
SSKRNSEKRRVSTTMYILRDSVKNTSSKDKSAYVLVSKQDDQQLSAKPVTLGSTAGTEAL
EEDSGPSGIIDGGKKKVLLLKGKEKDISHVSSNILQREGVTSTVKNILGSAAGRSNPRRE
SSGKIIRSILLNKEARHGQSSSLQSESQMQTSNLEKDKRPPRPAHTQLVLKDTNGSVEGK
AIGNELHGLCGEKAEKRTRNKDRPDRSVWALRRSDGSFASDESLSSASQLGKSLDSAEGN
HGDVRVEISNTRIGETKMFGSGRSSHSSLDNGSSHKHIGRRGPAYNAKDSDGPSTMSEGR
HGKICG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtccgttggatcggaccaaggtggtactgcggcacttgccgccggcaatttcg
caggcgacgcttatggagcaaatcgacgtcgcgttttctgggaggtacaattgggtttcc
ttccgtcctgggaagggcagtcagaggcagcaatcatattctagagcctacattgacttc
aagaggccagatgatgttttggagtttgctgagttctttaatgggcacgtttttgttaat
gagaagggcacgcagtttagacccattgttgaatatgctccttcacaacgtgtcccaaag
caatggtcaaagaaagatggccgtgaagggaccatattcaaagatcctgagtatttgtct
ttgttggtgtttccccatcttgcatttgcaggtgcatcaaaagagactcctattgtcaca
cctttgatggattttgttcgacagaaaagagctgcaaaggatggatctcggaggtcttca
tcaaatggcaagccaagtcgaagagctactggatcatcaggtagaagtcctgggtcaacc
tcatcaaaacgtaattctgaaaagagaagagtttccactacaatgtatattttgagagac
agtgttaaaaacaccagtagcaaggacaagtcagcttatgttcttgtttcaaaacaagat
gatcagcagctttctgctaagccagtgactttaggttctacagctggaactgaagctttg
gaagaggacagtggaccatctggaattattgatggtgggaagaagaaggtattgcttcta
aaaggaaaagaaaaagatatttcgcatgtgagtagtaacattttacagcgggagggtgta
acatctacagttaaaaatatacttggttcagcagctggcaggtccaatccacggcgtgaa
agtagtggaaagataatcagaagcatactgctgaacaaggaagctcgtcatggtcaatct
tccagtctccaatctgagtcccaaatgcagacatcaaatcttgagaaggacaaacggcct
cctcgtcctgcacatactcaattggttttgaaggatacaaatgggtcagtggagggtaaa
gctattggtaacgagttgcatggtttatgtggcgagaaggcagaaaaacgtaccagaaat
aaagatagacctgatcgtagtgtgtgggctcttcgtcgttcagatggatcatttgcaagt
gatgagtctttgtcttctgcttctcaacttgggaagtcattagactctgcagaaggaaat
catggagatgtcagggttgaaatttcaaatacaaggattggggaaactaaaatgtttgga
agtggacgaagcagccattcttctttggataacggctcctcccataagcatatcggccgt
cgtggacctgcatataatgcaaaggattctgatggcccatccaccatgagtgagggaagg
catggcaaaatttgtggatga
DBGET
integrated database retrieval system
