Carica papaya (papaya): 110811056
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Entry
110811056 CDS
T05151
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
110811056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110811056
Enzymes [BR:
cpap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110811056
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
110811056
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
110811056
NCBI-ProteinID:
XP_021893120
LinkDB
All DBs
Position
Unknown
AA seq
1031 aa
AA seq
DB search
MTEETKFSVLVSLFNWIQKSKTSTQKRSKFRKFLDTFCKPVDYFAAIRLILPSLDRERGT
YGLKESVLATCLVDALGMSRDSEDAVRLINWRKAGAKAGANAGNFALVAAEVLQRRQGMA
SGGLTIKELNDLLDRLASSENRNGNRSEKISVLSILIKMTNAQEMKWIVMIILKDLKLGI
SEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKAVRPQLAMRVGDAT
VAWKKLHGKEVIVECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYAHAMSDLIVQHVLVDR
CILDGEMLVWDTSLDQFAEFGSNQEIAKAAKEGLDSHRQLCYVAFDILYVGDTSVIHQSL
KERQELLQKVVKPLKGRLEILVPNGGLNSHRSLGEPCWSRIAYSADDVDRFFKETIENRD
EGIVIKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDALIIGGYYGSGRRGGEVAQFLVGL
AESSGPNVYPRRFISFCRVGTGLSDEELDTVVSKLKPYFRKYEYPKKAAPSFYQVTNHSK
ERPDVWIDSPEKSIIFSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFV
ELVHSSNGTTQKHEEYEGLPGSRVKHGRSSKRGDKKHVSVVPSHFLHTDVSNIKGKTFIF
SKMMFYFVNVPPTYSLDSLHKMVVENGGAFSMNLNSSVTHCIAAENTGIKYQGAKLRGDI
IHYSWILDCCSQKKLLPLQPKYFLFLSDTSRKRLHEEIDEFSDSYYCDLDLADIKQLLSN
IYGSEDIKNVDYYKKMLCPKDKWCCFHGCCIYFYTCTESLKPDWETLSGLTLRRLTLEVL
MGGGKVSNNLAHASHFILLSALGDRMDFDFLMKSLGTEERCLLSRKKLHVVQSQWLEDSL
EREQKLQEDAYSLKPKGYYGSKLEESNSDQDMEKPTSLDGVGSLNLLPLPVNKGKQRRGK
LSGKDSVIPNSSNRDGKRKRGRPAGKIVKGRNVIQARRTRPRLGKIASKISENETEDSGS
SDEKMNDEEND
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgacagaggaaaccaagttcagcgtgttagtaagtctgttcaactggattcagaagagc
aaaacctccacccagaagcgctccaaattccggaagttcctcgacactttctgcaaaccc
gtcgactactttgctgccattcgccttatccttccttcgctcgatagagagcgggggacc
tacggtcttaaggagtcggtactcgccacctgcctcgtcgatgccctcggcatgtccagg
gactccgaggacgccgtgcgtctcatcaactggcgcaaagccggcgccaaggccggtgct
aatgcgggaaactttgctctcgttgctgctgaggtcctgcagagaaggcaaggaatggct
tcgggtggactcacaatcaaggagttaaatgatttgcttgatcgcttagcttcgagtgaa
aacagaaatggcaatagatcagagaagatttcagtcctttctatccttattaagatgaca
aatgcccaggaaatgaaatggattgtcatgataattcttaaagatctgaaattggggatt
agcgaaaagagtatttttcatgaatttcaccctgatgctgaagatttgtttaatgtcacc
tgtgacttaaagttagtttgtgaaaagttgagagatcgcagtcaacggcataagcggcag
gatattgaagtaggaaaggctgtgcgtccccaactggctatgagagttggtgatgcaact
gttgcatggaagaagcttcatgggaaggaagtgattgttgagtgtaaatttgatggagat
cgcatccaaattcacaaaaatggaacggagatacactatttctcaaggaactttcttgat
cactctgaatatgcacatgcaatgtcagatcttatcgtgcaacatgttctggttgatagg
tgtattcttgatggagaaatgttggtctgggacacatctttggatcaatttgctgagttt
ggttcaaaccaagaaatagccaaggcagcgaaagaagggcttgacagtcatagacagttg
tgttatgttgcatttgatatcctttatgtcggagatactagtgtcatccaccaaagtttg
aaggaaaggcaggagctgctacagaaagtggtgaagcctttgaaaggccgtttagagatt
ctagtaccaaatgggggtcttaattctcatcgctctcttggggagccttgttggtcacgt
attgcttacagtgccgatgatgttgacagatttttcaaggaaaccatcgaaaatagagac
gaaggaattgtcataaaagaccttggttccaaatgggaacctagtgaccgtagtggaaag
tggttgaagttgaagccggattatattcgtgctggttctgacttagatgctcttatcata
ggaggatactatggctctggacgtcgtggaggagaggttgcacaattcttagttggttta
gctgagtcttcaggaccaaatgtatatcccagacggtttatctccttttgcagggtgggt
actgggctttctgatgaggagcttgatactgttgtttccaaattaaaaccttattttagg
aaatatgaatacccaaagaaggcagcaccaagcttctatcaggttacaaatcattccaaa
gagagaccggatgtttggattgacagccctgagaaatcaataattttttctattaccagt
gacattaggactataaggtccgaggtatttgctgcaccatacagcctgagatttccgcgt
attgatagagtaagatatgacaagccttggcatgaatgccttgatgtgcagtcatttgta
gaattagtacattcaagtaatggtaccacacagaaacatgaagaatatgaagggctgccg
ggtagtagagtgaagcatggaaggtcttccaaaaggggagataagaagcatgtctcagtt
gttccgtcacactttcttcatactgatgtttccaacattaagggaaaaaccttcatattc
tcaaagatgatgttttactttgttaatgtgcctccaacatattctcttgattctttacac
aaaatggttgttgagaatggtggggcattttccatgaatttgaactcctctgtcactcac
tgtattgcagctgaaaatactgggattaaatatcagggagcaaagctgcggggagatatc
atccattattcttggattttggattgttgttcacaaaagaagcttctccctcttcagcca
aagtatttcctctttctgtcggatacttcaaggaagagattacatgaagaaattgatgaa
ttttctgattcttattattgcgatcttgatcttgcagacattaaacagctcctaagtaat
atttatggatccgaagacataaaaaatgtggactattataaaaaaatgctgtgtccaaag
gacaaatggtgttgttttcatggctgctgcatctacttctacacatgtacagagtctctc
aaacctgactgggaaaccttgtcgggactcacactgaggaggttgacacttgaagttttg
atgggtggtggaaaagttagtaacaatcttgcccatgcttctcattttatactcttgtca
gcattgggggacagaatggattttgatttccttatgaaaagtctcggtactgaggagaga
tgtctcttatcaaggaagaaattgcatgttgttcaatctcagtggttggaggacagcttg
gagcgggagcaaaagttgcaagaagatgcatatagcttgaagcctaagggctactatggg
tcaaaacttgaagagagcaactcggaccaagatatggaaaaacctactagtttggatggt
gtaggaagcttgaatttgctgcctttgcctgtcaacaaggggaaacagagaagagggaaa
ctttctgggaaagattctgtaataccaaactcctccaatagagatgggaaaaggaaaaga
ggaaggcctgctggaaagattgtgaagggtagaaatgtcatccaagctcgaagaacacgg
ccacgtcttggcaaaatcgcttctaaaatatctgaaaatgaaacagaggatagtggatct
tctgatgaaaaaatgaacgatgaagagaatgat
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