Carica papaya (papaya): 110817799
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Entry
110817799 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03022
Basal transcription factors
cpap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110817799
09124 Replication and repair
03420 Nucleotide excision repair
110817799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpap03021
]
110817799
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110817799
Transcription machinery [BR:
cpap03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110817799
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110817799
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
DUF1576
Motif
Other DBs
NCBI-GeneID:
110817799
NCBI-ProteinID:
XP_021902185
LinkDB
All DBs
Position
Unknown
AA seq
454 aa
AA seq
DB search
MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLQPLAKKYVLQTLYIDVPVPA
TMLEEWVLADGVSKHRVAIDRLIQLRIFTETVDRYEEGNHYRLNPIFQANLQKHMYMGNG
VLPREPMPSNVTARLPSLQELEAYALEQWECFLLQLISSTQAEKLTSFSSSMMKVFQRGL
LTQRDKEAPRLTESGFQFLLMDTSAQLWYIIREYISNSEERGVDPADLISFLLELSFHVT
GEAYNINTLTDIQRSTIKDFADLGLVKLQQGRKESWFVPTKLATNLSASLTDSSTRKEVS
YYLYLNIEASFLNLIFLTXLIFXYIYRVEYQLPNLIVGAITKESLYNAFENGITAEQIIS
FLQQNSHPRIAERVPSVPENVTDQIRLWESDLNRVEMAPAHFYDEFPSREVFEAACDFAR
EWSGLLWEDSKKMRMLVKAEVHLHMREFLRGQNK
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaagtgaagatcattgccaagaatttcatggacatggtggcatctctgcctgca
atcaagcttgacaagctttacaacaatgttttcatctgtgaagccattctcaggtctctg
caacctctagccaagaaatatgtattacagaccttgtacattgacgtcccggtgccagcc
acgatgttagaagaatgggtgcttgcagatggagtctctaagcacagagttgcaattgat
agattgattcaattaaggatttttacggaaactgttgataggtatgaagaaggaaaccac
tatagattgaatccgatatttcaagctaatctccagaagcatatgtatatgggtaatgga
gttttgccaagagaacctatgccttcaaatgttactgcaaggctccctagcttgcaggaa
ctcgaagcttatgcccttgaacaatgggagtgcttcctgctgcaacttataagctcaacc
caggctgaaaagctgacaagtttcagctcttccatgatgaaagttttccagcgtggtctt
ttgactcagagggataaagaagccccaaggttaactgaaagtggtttccaatttttgctg
atggatacaagtgcacaactttggtacatcattagagaatatatatctaattctgaggag
cgaggtgtagatccagcagatttgatttcatttctgctagagcttagttttcatgtcaca
ggcgaggcatataatataaataccttgactgacattcagaggagcacaattaaggacttt
gcagacctaggattggtcaaacttcagcagggcaggaaagaaagttggtttgtacctact
aaattagccaccaatttgtcagcaagcttaactgactcatccactcggaaagaggtatct
tattatttatatcttaacattgaagcatcattcttgaatctcatattcttgacttaatta
attttttgatacatatacagggtcgagtatcaacttcctaaccttatagttggagcaata
accaaagaaagcttgtataatgcctttgaaaatggcattacagcagaacagataatcagt
tttcttcagcaaaattctcatcctcgcattgcagagagagtaccatctgttcctgagaat
gttacagatcagataagattgtgggaatctgatctgaatagggttgagatggcccctgct
cacttctatgatgaatttccttccagggaggtttttgaggcagcctgtgactttgcgcga
gaatggagtggcttactctgggaggactcgaagaagatgcgtatgctagtgaaggcagag
gttcacttgcatatgcgagagtttcttcgaggtcaaaacaagtag
DBGET
integrated database retrieval system
