Clostridium pasteurianum BC1: Clopa_4587
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Entry
Clopa_4587 CDS
T02645
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpas
Clostridium pasteurianum BC1
Pathway
cpas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clopa_4587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpas03400
]
Clopa_4587
Enzymes [BR:
cpas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clopa_4587
DNA repair and recombination proteins [BR:
cpas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Clopa_4587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
MFD_D3
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AGK99280
UniProt:
R4KI37
LinkDB
All DBs
Position
complement(4644021..4647539)
Genome browser
AA seq
1172 aa
AA seq
DB search
MRFRGLIQPLRESREFINILYNINKNKFPIGISGLSESARSYFVYSLYEEINAPFVVVTD
NDVEAKKLYEDLSLYLSNVYYFPTKDVVFYNVDAISGDLRWERIKIIKEMLLKGRKIIVT
SIEAFSSYYSPVELYKKYTFNIGLGDAINLDKFSKELILSGYERVETVDSKGQFSIRGGI
FDIFPPISNMPYRIEFFGDEIESIRTFNTGSQRSIEKVTKVDIFPAKEIILEESNIERGY
NLIKEELSVVVENLKEKKDKEAKGKISGIINRNLEALRESSTFETIDSFLPFFYDKPSTF
FDFIQDSIIIIADDLRCKGKLSSVFFEFQENYKAFLERGDILPGQGELLFPEKEIYEVLN
SSKIINITGIEKSKGFLKNTYDESFREITLSNFGGVLEVLINEIKDKKDKGYKTVILCGS
KPRGERLVNTLRDRGIESNYRDEIQSIQFGEIVITFGSLNKSFEYPDLKLCVISDKEIFG
ESKRKSKKKIQKGVSKIKSFAELKPGDYIVHVNHGIGVYKGIKQLEVEGHKKDYLELTYT
GDDKLFVPVEQLDLVQKYIGSDGNSPKVSKLGGNEWTKAKNKVKKSINEIAEELVKLYAV
RSTLNGYTYSKDTIWQKQFEDEFPYDETPDQLSAIEDIKHDMEIGKVMDRLLCGDVGYGK
TEVAVRTAFKAVMDGKQVAFLVPTTILAEQHYTNLKKRFSDFPVKIDMISRFRTSAQQKV
TIKALKEGNVDVLIGTHRILQKDVQFKDLGLLIVDEEQRFGVTHKEKIKNLKKNIDVLTL
TATPIPRTLHMSLTGVRDISVMETPPEERYPVQTYVVEYNDQLIRDAVMRELNRDGQVFF
VYNRVETINDMAAKLTKLIPEAKVAVAHGQMTERELETEMLGFMNKEYDILLCTTIIETG
IDIQNVNTMIIYDADKMGLSQLYQLRGRVGRTNRIAYAYFTYRKDKVLTEIAEKRLKAIK
EFTELGSGFKIAMRDLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDAIKQYKGDVEKEP
IETSIELKIDAYIPNSYIENEVQKIEIYKKIASIESKEEFFDIQEELEDRYSDIPISVAN
LMHIAYIKSLAKKVGIIDIKDKKDFVNFKFYDKNRITDKLVKSLIKDYNRSIVFRLEDKP
IIVYNLRNSKRENLLINLTELLEYIISIVETK
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaggtttagggggcttattcagcctttaagagaaagtagagaatttataaatatacta
tacaatataaataaaaataagttcccaattggaatatcagggttatctgagtcggcaaga
agttattttgtttacagcttatatgaagaaataaatgctccttttgttgttgtaacggat
aatgatgtggaggcaaaaaagttatatgaggatttatccttatatttatcaaatgtttat
tattttccaactaaagatgtagttttttataatgttgatgcaatttctggtgatttaaga
tgggaaagaataaaaatcataaaagaaatgcttctaaagggaagaaagataatagtaact
tcaattgaagctttttcatcttattattccccagtagaattgtataagaaatatacattt
aatattggccttggtgatgctattaatttagacaaattcagtaaagaacttattttatct
ggctatgaaagagtagaaactgtagatagtaaagggcagttttctataagagggggtata
tttgatatatttccgcctatatctaatatgccttataggattgagttttttggagatgaa
attgaatccataagaacttttaatacaggatctcagaggagcattgagaaagtaactaaa
gtggatatatttccagcaaaagaaattattttagaggaaagtaatattgaacgaggatat
aatttaataaaagaagaactttctgtagtagtagaaaatcttaaagaaaaaaaagataaa
gaagctaaagggaaaatatctggtataataaataggaatttagaagcattaagggaatct
tcaacctttgaaaccatagatagctttttgccattcttctatgataagccatctacattc
tttgattttattcaggattcaataataataattgcagatgatttaagatgtaagggcaag
ttaagcagtgtattctttgaatttcaggaaaattataaagctttccttgagagaggagat
atattaccaggtcaaggtgaactgctttttccagaaaaagaaatttatgaggtgctgaat
agcagcaaaataattaatataactggtattgaaaaatctaaaggttttctcaaaaatacc
tatgatgaaagttttagagaaataaccttaagtaattttggtggagtccttgaagtgctt
ataaatgaaattaaggataagaaggataaaggatataaaacagttatattgtgtggaagt
aaacccagaggagaaagattagtaaatacacttagagatagaggtatagagagtaattat
agagatgaaatacaaagtatacaatttggagagattgtcatcacttttggaagccttaat
aaaagttttgaatatcctgatttgaagctttgtgttatttcagacaaagaaatttttggt
gaatcaaaaagaaagtcaaaaaagaaaattcaaaaaggtgtaagtaagataaagagtttt
gctgagctgaaaccaggagattatatagttcatgttaatcatggaataggtgtatataag
ggaataaaacagcttgaagttgaaggacacaaaaaagattacctggaactaacctacact
ggtgatgataaattatttgttccagtggaacaacttgatctggtacaaaaatatataggt
agtgatgggaattctccaaaagtaagtaaacttggtggtaatgagtggactaaagccaaa
aacaaagttaaaaaatcaattaatgagattgctgaggaactagttaaattgtatgcagta
aggtctactttaaacgggtatacctattcaaaagatactatctggcaaaaacaatttgaa
gatgagtttccctatgatgaaactccagatcaactaagtgctatagaagatataaagcat
gatatggaaattggtaaagttatggataggcttttgtgtggtgatgtgggctatggtaag
acggaagttgcagttagaacagctttcaaagcggtaatggatggaaaacaagtggcattt
ttagttccaactactatacttgcagaacaacattatacaaatttaaaaaaaagattttct
gattttcctgtaaaaatagatatgataagtagatttaggacctctgctcagcaaaaggtt
acaataaaagctttaaaagagggaaatgtagatgtacttattggtactcatagaatactg
caaaaggatgttcagtttaaggatcttggacttttaattgtagatgaagaacaaagattt
ggagtaacacataaggaaaaaattaaaaatctgaagaagaacatagatgtgttaacattg
acagccacacctatacctaggacccttcatatgtcacttacaggggtaagagatataagt
gtaatggaaacgcctccagaagagagatatccagtgcaaacttatgtagtagaatacaat
gatcaacttataagagatgccgttatgagagaacttaatagagatggacaggtgtttttt
gtatataatagagtagaaaccataaatgatatggcagcaaaattgacaaaattaattccg
gaagctaaggtagcagtggcacatgggcagatgacagaaagagaattggaaacagaaatg
ctaggctttatgaataaagaatatgatatacttttatgtactactataattgaaactggt
attgatattcagaatgttaacacaatgatcatatacgatgcagataagatgggattatct
cagctttatcagcttagagggagagtggggagaacaaacaggatagcttatgcttatttt
acatatagaaaggataaggtattaactgaaatagcagaaaagaggctaaaagcaataaag
gaatttactgagcttggttcaggctttaaaattgccatgcgagatttagagataagagga
gcaggtaacatgatgggatcagctcagcacggccatatggcgtcaattggatatgattta
tattgcaggatgcttgaggatgctataaagcagtataaaggcgatgtagagaaagaacct
attgaaacctctatcgaactcaaaatagatgcatatataccaaattcttacatagaaaac
gaggtacaaaaaatagaaatttataagaaaattgcatctattgaatcaaaggaggagttc
tttgacatacaggaagaactagaagatagatattcagatatacctatttctgttgctaat
ttaatgcatattgcttatattaaatcattagcaaaaaaagttggtataattgatattaag
gataaaaaggattttgtaaactttaagttttatgataaaaatagaattactgataagttg
gtgaaaagtttaattaaagattacaatagaagtatagtttttagattagaagataaacct
ataattgtatataatttaaggaattcaaaacgagaaaatctattaattaatttgactgaa
ttgctagaatatataatatctatagttgaaacaaaataa
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