Chlorobium phaeobacteroides BS1: Cphamn1_0812
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Entry
Cphamn1_0812 CDS
T00709
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpb
Chlorobium phaeobacteroides BS1
Pathway
cpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cphamn1_0812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpb03019
]
Cphamn1_0812
03009 Ribosome biogenesis [BR:
cpb03009
]
Cphamn1_0812
Enzymes [BR:
cpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cphamn1_0812
Messenger RNA biogenesis [BR:
cpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cphamn1_0812
Ribosome biogenesis [BR:
cpb03009
]
Prokaryotic type
rRNA helicases
Cphamn1_0812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UTP25
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ACE03763
UniProt:
B3ENY6
LinkDB
All DBs
Position
875503..877278
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AA seq
591 aa
AA seq
DB search
MTKNNGETVESTGFKDLGLSGQVLDALEKVGYETPTPVQLQTIPIILKGSDVLGQAQTGT
GKTAAFALPLLSTIDLSNASPQVLVLTPTRELALQVAEAFQRYAACMEDFHVLPIYGGQD
YSGQLRRLRRGVHVVVGTPGRVMDHIRRQTLNLDGLKTLVLDEADEMLRMGFVDDVEWIL
EKTPATRQVALFSATMPSEIRRITRKYLRDFTEVAIKSKSSTVESTTQRFLPVSGHHKLD
ALTRILEIEHYDGVIIFVRTKTQTVELSEKLRARGYASAALNGDMMQNHREKTVGQFKKS
VYNILIATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVTPREM
SMLRTIERAIRKRIDRMELPSTEIINDKRVARYKQQISDTLSTADLHFFRELVESYCFEH
DVTALDAAAALASLYQGDSPLLLTKQMKPFGREQKERKGRQDHADGRSFKSKGKKDPLYE
ALGFERYRIEVGEKHGVKPGNIAGAIINEIGLDGDAVGRITIFDDHSTVELPAGMPKDVF
MDLKKVRVCGLKLQASKADEGAGSPGKYSAKNSRKTAKSSKRVPGGKKKRK
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaaacaatggtgaaacagtagaatctacaggattcaaagacctcgggctttca
ggccaggtgcttgacgcgctggaaaaagttggttacgagacaccgaccccggttcagctg
cagactattccgataattctcaaaggcagcgatgttcttggccaggcacagacaggaacc
ggcaaaacagcggcattcgcgctgccgcttctttctacaatcgatctgtccaatgcatct
ccgcaggtgcttgtccttacaccgacaagggagctcgctctgcaggtggcagaggctttc
cagcgctatgcagcatgtatggaggactttcatgtgctgccgatctacggcggccaggac
tatagcggtcagcttcgacgcctcaggcggggcgttcatgtcgttgtcggaactccggga
agggttatggaccatatcaggaggcagacactgaacctcgatgggttgaagacgctcgta
ctcgatgaggctgacgagatgcttcgtatgggatttgtcgatgatgtcgagtggattctt
gaaaaaacgcctgccacccgtcaggtcgcgctcttttccgcaaccatgccgtcggagatc
cgccgaatcacgagaaaatatctccgtgacttcacggaggtcgccatcaagtcaaaaagt
tctacggttgaaagcactacccagcgttttcttccggtttcaggtcaccacaagctcgat
gcgctgacccggattctggaaatcgagcactacgatggagtgatcatttttgtccgcacc
aagacacagacggttgaactgtccgaaaagctgagggcgcgaggctatgcctcggctgcg
ctgaacggtgacatgatgcagaatcatcgggaaaaaactgtcggccagtttaagaagagc
gtctataatattctcatagccacagatgtagcggcaaggggactggatgtggaacggatc
agtcatgttattaattatgacattcccaccgatacggaaagttacgtccatcgtatcggt
cgtaccggtcgtgccggcagaagcggtgaggcgatactctttgtgacccctcgtgagatg
tcaatgctgcgaacgattgaaagggccattcgtaaaagaatagacaggatggagctgcct
tcgactgaaatcatcaatgacaagcgtgtcgcgcgttacaagcagcagatcagtgacaca
ctctctaccgcggatcttcattttttccgtgaacttgttgaatcctactgttttgagcac
gatgttaccgctctggatgccgctgcggctcttgcaagtctgtatcagggggacagtccg
cttctgctcacgaaacagatgaagccttttggacgggagcaaaaagagaggaaaggacgt
caggatcatgccgatggccgttcatttaaaagtaaaggcaaaaaagaccctctttacgaa
gcgcttggttttgagcggtaccgcatagaagtaggagaaaaacacggtgtaaaacccggt
aatattgccggcgcgattatcaatgagatcggtcttgacggagacgcggtcgggcggatt
accatatttgatgatcacagtactgtcgaactgcctgcaggaatgcccaaagatgttttc
atggatcttaaaaaggtacgtgtatgcgggctgaagctgcaagcctcaaaggcagacgag
ggagccggttcacccggaaagtattcggcaaaaaacagcaggaaaacagccaaaagctct
aaacgcgttccgggaggaaagaaaaaaagaaagtaa
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