Clostridium perfringens 13: CPE2207
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Entry
CPE2207 CDS
T00074
Name
(GenBank) transcription terminator Rho factor
KO
K03628
transcription termination factor Rho
Organism
cpe
Clostridium perfringens 13
Pathway
cpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPE2207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpe03021
]
CPE2207
03019 Messenger RNA biogenesis [BR:
cpe03019
]
CPE2207
Transcription machinery [BR:
cpe03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CPE2207
Messenger RNA biogenesis [BR:
cpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CPE2207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
NACHT
AAA_22
ATPase_2
OB_RNB
ABC_tran
AAA_25
AAA
SAP
Motif
Other DBs
NCBI-ProteinID:
BAB81913
UniProt:
Q8XIB4
LinkDB
All DBs
Position
complement(2526259..2527698)
Genome browser
AA seq
479 aa
AA seq
DB search
MNIEQYENMTLVQLKEQAKELGIKNISKKKKSELIEELKAEFNKQNSNTKVIHKDGVILR
EKISQKEQGGNKESFSGERVVRNSNNYNNSNDEGKKEQLKDMISSSDSAKGILEILDNNN
FGFLRCRNYLTSEDDIYVSPSQIRRFGLRTGDEVQGKVRIPKDGEKFKALLYVERVNGES
PEKAVGRKKFEELTPIYPKERLRLETENGRDLSSRLMDIICPIGKGQRGMIVAPPKAGKT
TLLKRIAQNISKNNPEVKLIVLLIDERPEEVTDMKRSIDGEVIYSTFDEEPQNHAKVSSI
VLERAKRMVEQGRDVVILMDSLTRLSRAYNLTVTPSGRTLSGGLDPGALIMPKKFFGAAR
NLEEGGSLTILATSLVDTGSRMDDMIFEEFKGTGNMEVHLDRKLQERRIFPAIDIYKSGT
RKEDLLFNEEEREASYKIRRVLQKENNIEDVAEKLINLLSKTKNNKEFLQVVLKSNLEN
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
ttgaatatagaacaatatgaaaatatgactttagttcagctaaaagagcaggctaaagaa
ttaggaataaaaaatataagtaaaaagaaaaaaagcgaattaattgaggaattaaaagct
gaatttaataaacaaaatagcaatactaaagtaatacataaagacggtgttattttaaga
gaaaaaatatctcaaaaagagcaaggtggaaataaagaaagtttttctggtgaaagagta
gttaggaatagcaataattataataattcaaatgatgaaggaaaaaaagagcaattaaag
gacatgataagttcatcagactctgctaagggaatacttgaaatactagataataataat
tttggttttttaagatgtagaaattatttaacaagtgaagatgatatatatgtttctcca
tcacaaataagaagatttggattaagaactggagatgaagtccaaggtaaagttagaata
ccaaaggatggagaaaagtttaaagctttactttatgtagagagagtaaatggtgaaagt
cctgaaaaagcagttggaagaaagaaatttgaagagttaacaccaatatatccaaaagag
agattaagacttgagactgaaaatggaagagatttaagttcaagacttatggatataatt
tgtccaataggtaagggacaaagggggatgatagttgcaccacctaaggctggaaaaaca
actcttttaaaaagaatagctcaaaacatatcaaagaataatcctgaagttaaacttata
gtgcttttaatagatgaaagaccagaagaagtaacggatatgaagagaagtatagatgga
gaagtaatctattcaacttttgatgaagaaccacaaaaccatgctaaagtttcaagtata
gtattagaaagagctaaaagaatggttgaacaaggaagagatgtagttatcttaatggat
tctttaacaagattatcaagagcctataacttaacagttactccatcgggaagaacttta
tcagggggactagatccaggggcacttataatgcctaagaaattctttggagcagctaga
aatttagaagagggcggaagtttaacaattttagcaacttctttagttgatacaggaagt
agaatggatgatatgatttttgaagagtttaagggtactggaaatatggaagtacactta
gatagaaagcttcaagagagaagaatattcccagctatagatatttataaatctggtact
agaaaagaagatttattatttaatgaagaagaaagagaagcttcatataaaataagaaga
gtattacaaaaggaaaataatatagaggatgtagctgaaaagcttataaatttattatca
aaaacaaaaaataataaagagtttttacaagttgttttaaaaagcaatttagaaaattaa
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