Chaetura pelagica (chimney swift): 104386271
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Entry
104386271 CDS
T08631
Symbol
HERC4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104386271 (HERC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpea04121
]
104386271 (HERC4)
Enzymes [BR:
cpea01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
104386271 (HERC4)
Ubiquitin system [BR:
cpea04121
]
Ubiquitin ligases (E3)
HECT type E3
104386271 (HERC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
104386271
NCBI-ProteinID:
XP_009993150
LinkDB
All DBs
Position
Unknown
AA seq
1056 aa
AA seq
DB search
MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFLNKRVRDVGCGLRHTVFVLDDGTVYTCGC
NDLGQLGHEKARKRPEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAWGLATDGQLGLPG
TEECVRVPRNIKSLSEIQIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYTKQNS
PHVIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDDNDRYVPTLLKSLR
TQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSVVTQIT
CGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFTVKGNWLPYSTQCPITTGTED
CYCVKRIFSGGDQSFAHYFYPQDMVPPDDFRYPDFLKQIWTVNEMFIQRLLAFPSGRLPV
EIANEIDGTFSSAGCLNGSFLALSNDDHYKTSTRFSGVDMNAARLLFHKLIQPDHAHISQ
QVAASLEKNLIPKLTSSLPDVEALRLYLTLPECPLMNDANNFTTLAIPFGAAILNLEKAP
LKVLENWWSVLEPPLFLKIVELYKDVVVHLLKLCKMGVPASERRILTNFLHTAFRVLEIL
HRVNERGQVIQYDRFYIHEIQDLIDIRNDYVNWVQQQVFGMDVNHGLTELTDIPITICTY
PFVFDAQAKTTLLQTDAVIQMQIAVDQAHRQNLSSLFLPVFESVNPCLILMVRRDNIVGD
AVEVLRKTKNVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEESRL
IWFSDKTFEDSDLFHLIGVVCGLAIYNFTIVDLHFPLALYKKLLNKKPSLDDLKEMMPDV
GRGMQQLLDYPEDDIEEAFCLNFTITVENFGTTEIKELVPNGADIPVVKQNRQDFVDAYV
DYIFNKSVASLFSAFHAGFHKVCGGKVLQLFQPSELQAMVIGNTNYDWKELEKNTEYKGE
YWADHPTIKIFWEVFHELSLEKKKQFLLFLTGSDRIPILGMKCLKLVIQPTGGGEGYLPV
AHTCFNLLDLPKYTDKETLKSKLIQAIDHYEGFSLV
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgctggggaaatgcatcttttggacagcttggattgggtggaattgatgaagag
attgttttagaacccagaaaaagtgactttttcttaaataaaagggtcagagatgtagga
tgtggactcagacatactgtttttgtcctggatgatggaactgtttatacatgtggatgc
aatgatttaggacaactagggcatgaaaaagccaggaaaagacctgagcacgttggtgca
ctggatgcccaaaatattgtagctgtatcatgtggagaagcccacacacttgcattaaat
gacaagggtcaggtatatgcttggggtctggctactgatggacagcttggcttgccggga
acagaggaatgcgtcagagtgcccaggaatattaaaagcttatcagagatccagattgtt
caagttgcttgtggttattatcattcactagcactctcaaaaggaagtgaagtgttttcc
tggggacagaacaaatatggtcaactgggcttaggttatgagtatacaaaacaaaactca
ccacatgtgattaaatctctgctgggaatcccttttgcacagattgcagcaggaggagct
catagctttgtactcactctttctggagccatttttggatggggacgcaacaaatttgga
cagctggggctcaatgatgataatgacaggtacgttcctactctgctaaagtcactgaga
actcagaaggttgttcatatatgttgtggagaagatcatactgctgcccttacaaaggaa
ggtggggtttttacatttggagctggaggctatggtcagttgggtcataactctaccagc
catgagataaacccaaggaaggtttttgaacttatgggaagtgttgtgacacaaatcact
tgtggcaggcagcacacgactgcatttgttccttcatctggaagaatctattcttttgga
ctgggaggcaacgggcaattaggtacaggaacaaccagtaataggaaaagtcccttcaca
gtgaaaggaaactggcttccttatagtactcagtgccccataaccacaggcactgaggac
tgttattgtgtaaagagaattttctctggtggggaccaaagttttgcacactatttttat
ccacaggacatggtgccaccagatgattttaggtaccctgactttttgaagcagatctgg
actgtgaatgaaatgtttattcaaagattgctggctttcccatcaggaagacttcctgta
gaaatagctaatgagattgatggaacattctcctcagctgggtgcctgaacgggagcttt
ttagctttgagcaatgatgatcattacaaaaccagcactagattctcaggggttgatatg
aatgctgctagactactgtttcacaaacttatacagcctgaccacgctcatatatcacaa
caggtggcagctagtttggaaaagaaccttattcccaaattaaccagttccttgccagat
gttgaagctttgaggctgtatctcactctaccagaatgcccactgatgaatgatgctaac
aatttcacaacattagctattccttttggagcagctattctaaacctagagaaagctcct
ctgaaagttcttgaaaattggtggtctgtacttgaacctcccttgtttctcaagatagtg
gaactctacaaggatgttgtggtccacctcttgaagctgtgcaagatgggtgttcctgct
tctgaaagaagaatacttaccaactttctacacacggctttcagagttctggaaatactg
cacagagtaaatgaaagaggacaagttatccagtatgacagattttacattcatgagata
caagatttgatagatatcagaaatgactatgtcaactgggtccagcagcaggtatttgga
atggatgtcaaccatggattaactgagttaacagatattcctatcacaatttgcacatac
ccatttgtatttgatgcccaggcaaaaacaactcttctacaaacagatgcagtcatccag
atgcagatagctgttgatcaggctcacaggcagaatttatcttctctctttctgccagta
tttgagtctgtcaacccatgcctgatactaatggtacggagagacaatattgtaggagat
gctgtggaagtcctaaggaaaaccaaaaatgtggactacaagaagccactcaaggttatt
tttgtaggggaagaagctgttgatgctggaggtgttcgcaaagaattttttttgctcatt
atgagggagttgctagatcccaaatatggaatgttcaggtactatgaagagtccaggctg
atctggttctctgataagacctttgaagacagtgacttgtttcatttgataggtgttgtc
tgtgggctagcaatatataattttactattgtagaccttcatttccctttggctttgtac
aaaaagttgttgaataagaaaccatccctcgatgacttaaaagagatgatgccagatgtt
ggcaggggtatgcaacagttactggactatccagaggatgacatagaagaagcattttgt
cttaactttactatcacggtggaaaattttggtactacagaaattaaggagcttgttcct
aatggtgctgacattcctgtagtcaaacaaaataggcaggattttgtagatgcatatgtg
gattacatcttcaacaaatctgtggcttccttgttcagtgcattccatgcaggcttccac
aaagtatgtggaggtaaagttcttcagctttttcagcccagtgagttacaggcaatggtg
attggcaacacaaactacgactggaaagaactggagaagaatacagaatacaaaggagaa
tactgggcagaccatcctacaattaaaatattctgggaggtgtttcatgagttgtcttta
gagaagaagaaacagtttttgctgtttctcacaggcagcgatcgtattccaattcttgga
atgaagtgtcttaaactagtcatccaaccaacaggaggtggagaaggttaccttccggta
gctcacacttgctttaatcttcttgaccttccaaaatacacagataaagaaaccctaaaa
tctaagttgatccaggctatagatcactacgaaggtttcagtttagtataa
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