Chaetura pelagica (chimney swift): 104386479
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Entry
104386479 CDS
T08631
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03013
Nucleocytoplasmic transport
cpea03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104386479 (UPF1)
03015 mRNA surveillance pathway
104386479 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpea03019
]
104386479 (UPF1)
Enzymes [BR:
cpea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104386479 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104386479 (UPF1)
Messenger RNA biogenesis [BR:
cpea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104386479 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104386479 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104386479
NCBI-ProteinID:
XP_009993393
LinkDB
All DBs
Position
Unknown
AA seq
1077 aa
AA seq
DB search
MTWLRGQKFQETPLPWQPLEQHLPREPDDGILDNLVNGPDGILQNGAVDDNVAKTSQLLA
ELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLV
RAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKD
INWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLE
KPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKR
IAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGA
PVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPK
RFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA
PSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLK
DETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQA
TEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQ
YRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSG
TSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEV
EIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSK
QPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAI
IPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQA
NGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISM
SQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgacctggctcaggggccagaaattccaggagactccacttccatggcagcccctggag
cagcatctgccacgggaacctgatgatggaatcctggataacctggtgaatgggcctgat
gggatcctgcagaatggagctgtggatgataacgtggctaaaaccagccagcttctggca
gagttgaattttgaagaagatgaagaggatacctattatacaaaggatctccctgtgcat
gcttgcagttactgtggtatccatgaccctgcctgtgtggtttattgtaacaccagcaag
aagtggttctgtaatgggcgtgggaacacgtctggcagccacattgttaatcaccttgtg
agagcaaagtgcaaagaggtgactctccataaggatggacctctaggagagactgtcttg
gaatgttacaactgtgggtgtcgtaatgtgtttctccttggctttattccagccaaggca
gactctgtggttgttttgctgtgcaggcagccatgtgccagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagatcgctgtttcctttcctgg
ctggtgaagattccttctgagcaggaacagctgagagcacgtcagatcacagctcagcag
attaacaagctggaagaactttggaaggaaaatccatctgcaacgctggaggatctggag
aagcctggtgttgatgaagagccacagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttgggcctctagtgaagctggaggcagactatgacaagaaactcaag
gagtctcagacccaagataacatcacagtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactctgccaaagactgattcagatatgcgtcttatgcaaggagatgag
atctgcctgaggtataaaggagacctggcccctttgtggaaaggaattggtcatgttatc
aaagttcctgataattatggtgatgagattgccattgagctgaggagcagcgttggagca
cccgtggaagtgactcacaacttccaagtggattttgtgtggaagtcaacttcatttgac
agaatgcaaagtgctttaaaaacatttgctgtggatgagacctcagtgtctggctacatc
taccacaaactgttgggtcacgaggtagaagatgtcatcattaaatgccagttgccaaag
cgcttcacagcacaaggacttcctgatctcaaccattctcaggtttatgcagtgaagact
gtcctgcagcgtcctctgagccttattcagggtccccctggtactggaaaaacagtgaca
tcagccacaattgtctatcacctggctagacagggcaatgggcctgtgttagtctgtgcc
ccgagtaacatagctgtggaccagttgactgagaagatccatcagactgggctgaaggtg
gttcgtctgtgtgcgaaaagccgcgaggcaattgactcccccgtgtccttcctggcattg
cacaaccagatcagaaacatggacagcatgccagagctgcagaaactgcagcagctcaag
gatgagacaggggagctgtcatctgctgatgagaagcgttaccgagccctgaagcggaca
gcggagcgtgagctgctgatgaacgcagacgtgatctgttgcacgtgtgtgggagctggg
gatcccaggctggccaagatgcagttccgctccatcctgatcgatgagagcacacaggct
actgagccagagtgcatggtgcccgttgtcctgggagcaaaacagctcattctcgtgggt
gaccactgccagctgggccctgtggtgatgtgtaagaaagcagccaaggccgggctgtcc
cagtcgctgtttgagcggctggtggtgctggggatccggcccatccggctgcaggtgcag
taccgcatgcaccccgcgctcagcgccttcccctccaacatcttctacgagggctccctc
cagaacggggtcactgcagctgaccgtgtgaaaaaagggtttgatttccagtggcctcag
ccagataagcccatgtttttctacgttacacaaggacaggaagaaattgccagctcaggc
acctcttacttgaacaggacggaagctgccaacgtggagaagataactacaaagctgctg
aaagctggtgcaaaaccagatcagattggcattattaccccttacgaagggcagcgatcc
tacctggtgcagtacatgcagttcagtggctccctgcacaccaagctctaccaggaagtg
gaaattgcaagtgtggatgccttccagggacgggagaaggactttattatcctttcttgt
gtgagggccaatgaacaccaaggaatagggtttctcaatgaccccaggcgacttaatgtg
gctctgacaagagcaaggtatggagtgattattgttgggaacccaaaagcactgtctaaa
caacccctttggaatcacctgctgaattactacaaggagcagaaggtcctggtggaagga
cctctgaacaacctccgggagagcctgatgcagttcagcaagccccggaaactggtcaat
accatcaaccctggggcccgtttcatgaccactgccatgtatgatgcacgggaggccatt
atcccgggatctgtctacgaccggagcagccaagggcgtccatccaacatgtacttccag
acccacgaccagattgggatgatcagtgctggtcccagccacgtcactgccatgaacatt
cccattcccttcaacctggtgatgccacccatgccacccccgggatactttggccaggct
aatggaccagctgcaggacgtggggcgccaaaaggaaagactggtcgtggtgggcgccag
aaaaaccgttttgggattcctggaactagtcagtcaaaccttccaaatagtcaagccagc
caagatgtggtgtcccagcccttctcccagggcccactgactcaggggtatatctccatg
agtcagccatcacagatgagtcagcctgggctctcccaaccagaattatcacaggacagt
taccttggtgatgagtttaagtctcagattgacgtggcgctgtcccaggactctacttac
cagggggaacgtgcttatcaacatggcggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
