Chaetura pelagica (chimney swift): 104389791
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Entry
104389791 CDS
T08631
Symbol
RC3H2
Name
(RefSeq) roquin-2
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpea03000
]
104389791 (RC3H2)
04121 Ubiquitin system [BR:
cpea04121
]
104389791 (RC3H2)
Transcription factors [BR:
cpea03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104389791 (RC3H2)
Ubiquitin system [BR:
cpea04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104389791 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-C3HC4_4
Xin
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
104389791
NCBI-ProteinID:
XP_009997135
LinkDB
All DBs
Position
Unknown
AA seq
1190 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQTVKLSNVGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAASPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKISATVRTFPLLNKVGVNSTVSTTTGNVISVI
GSPEATGKMVPSTNGITNLESGVPQLIPRCADTSLRALENTKKGGKAGANGPSVSGSPTE
TLPENKVGSPPKTPVSQAAATSAGPPNIGTEVNSVPPKSSPFVPRVPVYPPHSDNVQYFQ
DPRTQLSYEVPQYPQTGYYPPPPTVPAGVAPCVPRFVRSNNVPESSLPPASVPYADHYST
FPPRDRLNSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPQMYPRDDIIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSVACQPPNEQRTVPLPREPCGHSKTGYDEQLRRKPEQW
AQYHTQKTPLVSSALPMATPSPTPPSPLFSVDFSTEFSESVSDISGTKFEEDHLSHYSPW
SCGTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQRRAKEEDPIIPFSDG
PIISKWGAISRSSRTGYHTTDPIQATASQGSATKPISVSDYVPYVNAVDSRWSAYGSDST
PAARYAERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLD
EGSRLTLNLLSKEIDLRNGETDYTEDCADTKPDRDIELELSALDTDEPDGQGEQIEEILD
IQLGISSQDDQLLNGTTVENGHPLKQHQKESMEQKRQSLGEDLVILEEQKTILPVTSCFS
QPVPAPVSNESCPPGTAGGARSLGLQTTHIMSEDKNDFLKPVANGRMVNS
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcagtggacagaatttctgtcctgcccaatctgctacaacgag
tttgatgagaatgtgcacaaacccatcagcttaggttgctcccacactgtctgtaagacc
tgcctcaacaagcttcatcgcaaggcatgtcctttcgaccagactgccatcaatacagac
atcgatgtgcttcctgtaaactttgcactcctccagttagttggagcccaggtacctgat
catcagacagtaaagttgagtaatgttggagagaacaaacattatgaagtagcaaagaaa
tgtgttgaggatttggcactctacttaaagccattaagtggaggaaaaggtgttgcaagc
ttgaaccagagcgcattgagtcgcccgatgcagcggaagctggtgacactggtgaactgt
cagctggtggaggaggagggacgagtcagggccatgagggcagctcgatctctgggagag
agaacggtcacagagctgatcctgcagcaccaaaatcctcagcagctttctgccaatctt
tgggctgctgtcagggcacgaggatgccagtttctaggaccagctatgcaagaggaggca
ctgaaacttgtattactggcactggaagatggctctgcactctcaagaaaagttctggta
ctttttgttgtacaaaggctagaaccaagatttcctcaggcctctaaaacaagcattggt
catgttgtgcagctactatatagagcatcatgctttaaggtcactaaaagggatgaggat
tcttctctgatgcaacttaaagaagagtttcggagttacgaggctttgcggagggaacat
gatgcccaaattgttcacattgccatggaagcaggacttaggatatcaccagaacaatgg
tcttcccttctttatggtgacttggcacataaatcacacatgcaatccattattgacaag
ctccaatctccagaatcttttgcaaagagtgtgcaagaattgacaattgtcttgcagcgc
acgggagatcctgctaacttaaacaggctgaggcctcatttggagctgctggcaaacata
gatccgaatccagatgcagcatctccaacatgggagcagctggaaaatgcaatggttgct
gtaaagactgtggtacacgggctggtggatttcattcagaattacagtaggaaaggccat
gaaactccccagccacaaccaaatagcaaatataaaacaagtatgtgccgagaccttcga
cagcaagggggatgcccaagaggaacaaactgtacatttgctcattctcaggaagagctt
gaaaaataccgcttgaggaacaaaaaaatcagtgcaacagtgagaacattcccccttcta
aacaaagttggcgtaaatagcaccgtctcaaccacaacaggaaatgtaatctctgtcata
ggaagccctgaagcaacagggaagatggtgccaagtactaatggaataactaacctagaa
agtggagttccccaattgatccctcgctgtgctgacacctccttgagagctttggagaac
accaagaagggagggaaggctggagccaatggccctagtgtttctggatcccctacagaa
acactacctgaaaataaagttggttctccacccaagactcctgtaagccaagcagcagct
acctcagctggtcctcctaatattggaacagaagttaattctgtacctccaaaatccagc
ccatttgttcccagagtacctgtctaccctccacattctgataatgttcaatatttccaa
gatcccaggactcagctgtcatatgaagttccacagtacccacagacaggatattaccca
ccacctccaacagtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccaat
aacgttccagagtcctccctcccacctgcttccgtgccatatgccgatcattacagtaca
tttccccctcgagaccgactgaattctccttaccaacctcctcctccgcagccgtatgga
ccagttcctcctgtcccctctggaatgtatgctccagtttatgacagcaggcgcatctgg
cgcccacagatgtacccccgagatgatattattaggagcaattctttacctcccatggat
gtgatgcactcatctgtctatcagacatcattacgtgagagatacaactctctggatggg
tattactctgtggcttgtcagcctccaaatgagcagaggactgtgcctttaccaagggag
ccttgtggtcattcgaagactggttatgatgagcagctaagacggaagccagagcaatgg
gcgcagtaccacacacagaagactcctctggtatcatcagcccttcctatggcaacacca
tctccaactccaccttctcctctcttcagtgtagatttcagcacagagttctcggagagt
gtcagtgatataagtggaactaaatttgaggaagaccatctctctcactactcaccctgg
tcctgtggcactattggctcctgtataaatgcaattgactccgagcccaaggacgtgatt
gccaattccaacgcggtgttaatggatttggacagtggggatgttaaaaggagagtgcat
ttatttgaaacacagagaagggcaaaggaagaagaccctataatcccattcagtgatgga
cctatcatctccaagtggggtgcgatctccaggtcatcccgcacgggttatcacaccacg
gatcctatccaggccactgcttcccaaggaagtgctaccaagcccatcagcgtatcagat
tatgtcccttatgtcaatgctgtggactccaggtggagtgcctatggctcagactcgacg
ccagcagcacggtatgcggaacgggacaggttcatagttacagatttgtctggtcacaga
aagcattccagcactggagatctattgagtattgaattacagcaggccaaaagtaactca
ttgttacttcagagagaggccaatgcactagccatgcagcagaagtggaattccctggat
gaaggcagtcgtctcaccttaaaccttttaagcaaggaaattgatttgaggaatggtgag
actgattatactgaagactgtgcagacacaaagccagatcgagacattgaactggagctg
tcagcccttgatacagatgaacctgatgggcaaggtgaacaaatagaagagattctggat
atacagctaggtattagttctcaagatgatcagctgctcaatggaacaactgtagagaat
gggcatccactaaagcagcaccagaaagaatcaatggaacagaagagacaaagtttaggt
gaagaccttgtgattctggaggagcagaaaacaatcctgcccgtaacttcttgcttcagt
cagccggtcccagcacccgttagcaatgagagctgcccgcccggcacagcaggcggtgcc
cgcagcctcggcctgcaaaccactcacattatgtctgaggataaaaatgactttttaaag
cccgttgcaaatggcaggatggttaacagctga
DBGET
integrated database retrieval system
